Query= MSMg01no399_o02.b1 MSMg01no399_o02.b1 CHROMAT_FILE:
MSMg01no399_o02.b1 PHD_FILE: MSMg01no399_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:00 2005
(469 letters)
>mm_chrY_1480142_1481010
Length = 869
Score = 845 bits (437), Expect = 0.0
Identities = 458/465 (98%)
Strand = Plus / Minus
Query: 5 gaattctataatatacaatagtatttatataaaattaagttagtgcaatgaatattttaa 64
||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gaattctataagagataatagtatttatataaaattaagttagtgcaatgaatattttaa 610
Query: 65 aattcagtggatctttatgtgttacatagcaccaacagaaaaaaaaatcagttagtgcca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aattcagtggatctttatgtgttacatagcaccaacagaaaaaaaaatcagttagtgcca 550
Query: 125 aactaactcccgatggctgcaccagaaaaaaagtgtaaatcagtgttcaaaggtatgaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aactaactcccgatggctgcaccagaaaaaaagtgtaaatcagtgttcaaaggtatgaat 490
Query: 185 ccacaagggaaagggggttgttagagatcaaggatatgcaggataggatatggaatctca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ccacaagggaaagggggttgttagagatcaaggatatgcaggataggatatggaatctca 430
Query: 245 gtagaccaaaacaggtgtactattagcaagtattctggaaaatcggctactcatgccttc 304
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 429 gtagaccaaaacaggtgtactattagcaagtagcctggaaaatcggctactcatgccttc 370
Query: 305 acaatcttcatactagggaaagttcagggttaggtaccctcaaaagtgggagtatgaaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 acaatcttcatactagggaaagttcagggttaggtaccctcaaaagtgggagtatgaaaa 310
Query: 365 ctttaatatatcacaggactctttgacttataaatgtagcgtgggctgatgtctacagtg 424
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 309 ctttaatatattacaggactctttgacttataaatgtagtgtgggctgatgtctacagtg 250
Query: 425 tgaaattgtttagaaatggcagtgtccatttttatcctttctgtg 469
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgaaattgtttagaaatggcagtgtccatttttatcctttctgtg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space: 394281
Effective search space used: 394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no399_o02.g1 MSMg01no399_o02.g1 CHROMAT_FILE:
MSMg01no399_o02.g1 PHD_FILE: MSMg01no399_o02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:00 2005
(149 letters)
>mm_chrY_1437120_1437668
Length = 549
Score = 281 bits (145), Expect = 2e-80
Identities = 148/149 (99%)
Strand = Plus / Plus
Query: 1 aaatctcatttaaattccctggggagtacaggaatctttgaatagacttggactatcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatctcatttaaattccctggggagtacaggaatctttgaatagacttggactatcctg 260
Query: 61 aggcctttaagtgaatgatgtcacaatgtgtaatacagcatacattggaaggagggagga 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 aggcctttaagtgaatgatgtcacaatgtgtaatacagcaaacattggaaggagggagga 320
Query: 121 gtccagtgagtccaacaatggtcctggta 149
|||||||||||||||||||||||||||||
Sbjct: 321 gtccagtgagtccaacaatggtcctggta 349
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 549
Length adjustment: 8
Effective length of query: 141
Effective length of database: 541
Effective search space: 76281
Effective search space used: 76281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
