Query= MSMg01no403_k20.b1 MSMg01no403_k20.b1 CHROMAT_FILE:
MSMg01no403_k20.b1 PHD_FILE: MSMg01no403_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:03 2005
(543 letters)
>mm_chrY_1271575_1272517
Length = 943
Score = 441 bits (228), Expect = e-128
Identities = 442/540 (81%), Gaps = 57/540 (10%)
Strand = Plus / Plus
Query: 42 tcagcctccttcagtctttctcaaatt-aaagaaatggttctgcagattctgtccattgg 100
|||||||||||||||||||||| |||| || ||| | ||| ||||||||||||| ||||
Sbjct: 222 tcagcctccttcagtctttctccaattcaaccaaa-gtttcagcagattctgtccgttgg 280
Query: 101 ttgtttgcatacatctgcatctcactgtttcacctgctcattatttcttcataagtacag 160
||| ||||| |||||||||||| | |||||| ||||||||||| |||||| |||| |||
Sbjct: 281 ttggttgcagacatctgcatctgattgtttcgcctgctcattaggtcttcagaagtgcag 340
Query: 161 tcatcctagcattaatattacaagtatctgaattcagaaacatacagaggctgtgtactg 220
|||| |||| ||| | ||||||| ||| ||||||||||||| | ||||||||| |||||
Sbjct: 341 tcatgctagtattcacattacaaatatgtgaattcagaaacctgcagaggctgcctactg 400
Query: 221 caagcaggtcttctgcaaaagcaat-----atataatataa--gtattaaaat--tgata 271
||| ||||||||||||||||||||| |||||| |||| | ||| | ||
Sbjct: 401 caatcaggtcttctgcaaaagcaatacacgatataa-ataactgaatt----ttctg--- 452
Query: 272 tcagtgctctacaatattctattctatgtgatgaaat----------atctctctctctc 321
|||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 453 tcagtgctctacaa-----tattctatgtgatgaaatctctctctcaatctctctctctc 507
Query: 322 t---------------t-tctctctctctctctcaatatatatattcctctaacacttag 365
| | ||||||||||||||||| |||| || || ||||||||||||
Sbjct: 508 tctctctctctctctctctctctctctctctctca--atatctactcttctaacacttag 565
Query: 366 tatgaataaagattctcttatattctctcctacaaaggggatgatattggcatgtcatct 425
||||||||| ||||||||||| |||||| ||||| |||| |||||||||| |||||||||
Sbjct: 566 tatgaataatgattctcttatcttctctgctacatagggcatgatattggaatgtcatct 625
Query: 426 gcaacattcattcactttcctacacagtttgtgctttctcttagaaatcaactaatatct 485
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 626 gcaacattcattcactttcctactcagtttgtgctttctcttaggaatcaactaatatc- 684
Query: 486 aaa-tcacacatgcactcagattacaaagtaaggtatctgagctcatgca-aactgttat 543
||| |||||||| ||||||||||||||| |||||||||| ||||||| | |||||||||
Sbjct: 685 aaagtcacacattcactcagattacaaaataaggtatcttagctcat--ataactgttat 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no403_k20.g1 MSMg01no403_k20.g1 CHROMAT_FILE:
MSMg01no403_k20.g1 PHD_FILE: MSMg01no403_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:03 2005
(498 letters)
>mm_chr5_126312537_126313432
Length = 896
Score = 217 bits (112), Expect = 2e-60
Identities = 387/506 (76%), Gaps = 63/506 (12%)
Strand = Plus / Plus
Query: 31 tctccttacatcacatag-atattttctacagt-gcatataag---cacatatattttag 85
||||||||||||||| || | ||||||||| || | |||||| ||||||||||||||
Sbjct: 236 tctccttacatcaca-aggacattttctactgtag-atataataaacacatatattttag 293
Query: 86 aatatactgaaactt-aaaaatgtaaattaaaaaaaaaaaacaaaaacctctaccaactt 144
||||||| ||||||| ||||||| |||| ||||||| | |||||||| ||||
Sbjct: 294 aatatacagaaacttgaaaaatggaaatggaaaaaaata--------cctctaccgactt 345
Query: 145 caaattaaaaaaacacatttattttagaattctctaggatactcgcaatttcctgtattc 204
|||||||||| |||||||||||||||||||||||||||| | ||||||||| | || |
Sbjct: 346 tgaattaaaaaa-cacatttattttagaattctctaggatagttgcaatttcccgcatac 404
Query: 205 cctactcatgatgtccatatgttagcatcttaca-aatttgtatgacaataatgaggaga 263
||||| |||||| ||||||| ||||||||||||| ||| |||||| |||||| ||||||
Sbjct: 405 cctacacatgatttccatatattagcatcttacataatc-gtatgaaaataattaggaga 463
Query: 264 aaataaaatttgtaaggaaaaaaaaaaagacagtttt---------gt--ct--t----- 305
|| ||| ||||||| |||||||| | ||||| || || |
Sbjct: 464 aattaacctttgtaa-----aaaaaaaatcc-gtttttccttccctgttcctgctccctg 517
Query: 306 -------------agactacttattaacaaatgcctgggccacaaactgtggcttattcc 352
|||||| |||||||||||||||| |||||||| || ||||| ||||
Sbjct: 518 aatgacgactctgagactatttattaacaaatgcctaggccacaagctttggctccttcc 577
Query: 353 cagaataacgtatttaacacattcaaaatattttatgttttgttcatttttagttacc-c 411
|| |||| |||||||| |||||||| |||| || || || | ||| |||| |||| |
Sbjct: 578 tggactaacttatttaacccattcaaactattctaagtcttctacatggttagatacctc 637
Query: 412 -cttt-atc-tatttacttagcatcttcctaaatatctcccttagcatatgtgccagcat 468
|||| ||| | || |||||||||||||| || |||||||||||||| || |||||||
Sbjct: 638 tctttcatcctcttc-cttagcatcttcctcaacatctcccttagcatctgccccagcat 696
Query: 469 ctgtccctgaatctg--tttattctc 492
|| ||||||||||| |||||||||
Sbjct: 697 ctttccctgaatctccttttattctc 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 896
Length adjustment: 10
Effective length of query: 488
Effective length of database: 886
Effective search space: 432368
Effective search space used: 432368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
