Query= MSMg01no411_n05.b1 MSMg01no411_n05.b1 CHROMAT_FILE:
MSMg01no411_n05.b1 PHD_FILE: MSMg01no411_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:00 2005
(487 letters)
>mm_chrY_2600963_2601843
Length = 881
Score = 190 bits (98), Expect = 2e-52
Identities = 176/212 (83%), Gaps = 22/212 (10%)
Strand = Plus / Plus
Query: 290 aagtgaatgtcaaaaggtgattttggattttgcctagccattataagggaatgagagctg 349
|||||||| ||| ||||| ||||||||| |||||||||||| |||||| | ||||
Sbjct: 490 aagtgaataacaacaggtgcttttggattctgcctagccattctaaggg--t----gctg 543
Query: 350 tctcagtatttgattactgtcaaacaagacatatatt-cttgggttttatgtcattgtag 408
|| || |||||||| ||||||||||||||||||| || | |||||||||||||||||||
Sbjct: 544 tcccactatttgataactgtcaaacaagacatat-ttccctgggttttatgtcattgtac 602
Query: 409 attataagaaatctttggtctcacctca------------tgtggctgcgtctccaagga 456
|||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 603 attataagaaatctttggtctcacctcactgggcactgcatgtggctgtgtctccaagga 662
Query: 457 gctgaaca-gagccccagcctgtctgacatct 487
||||| || ||||| || ||||||||||||||
Sbjct: 663 gctga-caagagccacaacctgtctgacatct 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 881
Length adjustment: 10
Effective length of query: 477
Effective length of database: 871
Effective search space: 415467
Effective search space used: 415467
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_n05.g1 MSMg01no411_n05.g1 CHROMAT_FILE:
MSMg01no411_n05.g1 PHD_FILE: MSMg01no411_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:00 2005
(424 letters)
>mm_chrY_2793715_2794538
Length = 824
Score = 679 bits (351), Expect = 0.0
Identities = 405/423 (95%), Gaps = 1/423 (0%)
Strand = Plus / Minus
Query: 1 attaaaaacaaactgaagaccagtcctcattttcctttacctggttttgaaaggccagat 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 510 attaaaaacaaactgaagaccagtcttcattttcctttacctggttttgaaaggccagat 451
Query: 61 tttcaaaatttgcatatataggccccaaattgattccaaatccagaggctcctctcaacc 120
|| |||||||||||||||||||| ||||| || ||| |||||||||||||||||||||||
Sbjct: 450 ttccaaaatttgcatatataggcgccaaagtgcttctaaatccagaggctcctctcaacc 391
Query: 121 tccgaagagctggtacttcagacataattcagggaaggctgtgtttatgtatgtgttgtt 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tcagaagagctggtacttcagacataattcagggaaggctgtgtttatgtatgtgttgtt 331
Query: 181 ttggtataggaaggtaagctctaactctatatgtcagtattatctcaaagcacatgtgca 240
||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||| ||
Sbjct: 330 ttggtataggaaggtaagcactaactctatatctcagtattatctcaaagtacatgtaca 271
Query: 241 gtttggactggccttgaaaatgaagtactcagcctgacaaatttaatggggcctaaagaa 300
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||
Sbjct: 270 gtttggactggccttgaaaatgaagtactcagccttacaaatttactggggcctaaggaa 211
Query: 301 acatgtcttctatattttttatacttaaattttattttttatttatttatttttt-attg 359
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 210 acatctcttctatattttttatatttaaattttattttttatttatttattttttcattg 151
Query: 360 ttgaagattgaatccagagcttctttgtgtagcattaaaatataagtccagccaggcgaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 150 ttgaagattgaatccagagcttctttgtgtagcattaaaatataagtccagtcaggcgaa 91
Query: 420 aag 422
|||
Sbjct: 90 aag 88
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space: 338225
Effective search space used: 338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
