BAC Information

Click to search

BAC

Clone NameMSMg01-412A04
ChromosomeY (Build37)
Map Location 1,114,003 - 1,114,447
singlet/doubletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412A04.T7 (MSMg01no412_a04.b1)MSMg01-412A04.TJ (MSMg01no412_a04.g1)
ACCAG508885AG508886
length791775
length of high quality
(start - end)
272 (49 - 320)445 (78 - 522)
definitionCHROMAT_FILE: MSMg01no412_a04.b1 PHD_FILE: MSMg01no412_a04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:14 2005CHROMAT_FILE: MSMg01no412_a04.g1 PHD_FILE: MSMg01no412_a04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCG
CGGAATTCTTTGTTCTGTCATGATCCCCATTTTTTAATGGGGTTATTTGA
TTTTCTGAAGTCCACCTTCTTGAGTTCTTTTATATATGTTGGATATTAGC
CCCCTATCTGATTTAGGATAGGTAAAGATCCTTTTCCAATCTGTTGGTGG
TCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTT
TCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCAAAAGCCATTGCT
GTTCTCTTCAGGAATTTTTCTCTCTGTGCCCATATCTTCAAGGCTTTTCC
CCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCC
TTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCAAT
TCGCATTCTTCTACACAATAACGACTCAGTTGTGCCAGCACCAATTGATG
AAAATGCTGTCTTTCTTCCACTGGATGGCTTTATCTCCCTTGTCGCAGAT
CCCGTGTTTTATACATGTGTGTTTTCACTTTCTGGTTCCTCACCTCATTT
TCTATTGCCCTATTTTGCCTGTTTTCCTCTCCCCCCCCATGTCTTTTTTT
TACCTTCTACTGCTCCCTTTTATCTTTGTTCTCCGACCTCGTCCTGTTTT
CCCCCTCTCTCCTACATATTTTCCCTATTCCTTCATCTTTCCTCTCTTCT
TATTCTCCTCCTTTTATCTTTCTACCCTCTCTCCCTATTCC
CCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGATACAGTATTCCTTCATAG
CTTTGTGCATAACATACCAGGTATCATAAGGACATGTAGGTGTGTAGTAT
GTTATTAATCTGTCCTCTTTATTTGATTGCAGCTTCAGAGTAGTAGGATA
CACTTGCCAATAATTCAGTTTCACATAAGAGGCTATTTATCCACACTAGT
GCATAGAAAGAGAAATGAACAATCACATAATATGAAGTGGCTAGTGAGTT
GGGATTGTGTATTAGAAAGCCATCTAGAGGAATGAACAGGGAGCTTAATG
GGCAAATTATGCCAGATATTAGCCTGATCCAGCTGCCAGTCTCTACCTGC
TGGTGCTAGGTCTGATTACCACTGGTTTCCTCATGTTACTTTTTTGCAGA
TCACTTTCATTTACTACAAGTTCAGCTGAATCAGGACCCAGTTTCCCTGC
AATTTCTTATAGTCCTGCCTCACCATGTCCAATATCTTTTCTTCTTAATC
GGAGTGTGCTTCCTTACTTTTTGGTTATGACGGTCCCCAAAAACAACCTG
TGCTTTTTACCCTCCTGCCATCTTCCTTTTGCATCCCTATTTTTTTGCTT
GTACACCCCTTTTAATATACACCTTCTTCTTCTCTATTACATCCTTATCC
TTTTTTATTTTCTTGCTTCCCTTTTTGCCTTCTCTTTTCTGCCCCTTACC
CTCTTGTATTTTTATCCCTTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_a04.g1 MSMg01no412_a04.g1 CHROMAT_FILE:
MSMg01no412_a04.g1 PHD_FILE: MSMg01no412_a04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:15 2005
         (445 letters)



>mm_chrY_1113803_1114647
          Length = 845

 Score =  853 bits (441), Expect = 0.0
 Identities = 444/445 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggatacagtattccttcatagctttgtgcataacataccaggtatcataaggacatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 caggatacagtattccttcatagctttgtgcataacataccaggtatcataaggacatgt 586

                                                                       
Query: 61  aggtgtgtagtatgttattaatctgtcctctttatttgattgcagcttcagagtagtagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 aggtgtgtagtatgttattaatctgtcctctttatttgattgcagcttcagagtagtagg 526

                                                                       
Query: 121 atacacttgccaataattcagtttcacataagaggctatttatccacactagtgcataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 atacacttgccaataattcagtttcacataagaggctatttatccacactagtgcataga 466

                                                                       
Query: 181 aagagaaatgaacaatcacataatatgaagtggctagtgagttgggattgtgtattagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aagagaaatgaacaatcacataatatgaagtggctagtgagttgggattgtgtattagaa 406

                                                                       
Query: 241 agccatctagaggaatgaacagggagcttaatgggcaaattatgccagatattagcctga 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agccagctagaggaatgaacagggagcttaatgggcaaattatgccagatattagcctga 346

                                                                       
Query: 301 tccagctgccagtctctacctgctggtgctaggtctgattaccactggtttcctcatgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tccagctgccagtctctacctgctggtgctaggtctgattaccactggtttcctcatgtt 286

                                                                       
Query: 361 acttttttgcagatcactttcatttactacaagttcagctgaatcaggacccagtttccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 acttttttgcagatcactttcatttactacaagttcagctgaatcaggacccagtttccc 226

                                    
Query: 421 tgcaatttcttatagtcctgcctca 445
           |||||||||||||||||||||||||
Sbjct: 225 tgcaatttcttatagtcctgcctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)