Query= MSMg01no414_a06.b1 MSMg01no414_a06.b1 CHROMAT_FILE:
MSMg01no414_a06.b1 PHD_FILE: MSMg01no414_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:53 2005
(583 letters)
>mm_chrY_1316281_1317254
Length = 974
Score = 495 bits (256), Expect = e-144
Identities = 502/592 (84%), Gaps = 28/592 (4%)
Strand = Plus / Plus
Query: 5 gaattcatatccaatgtttcccaatcagctttaatgccagctccatgggatctgacaact 64
|||||| ||||||||| || |||||| ||||||||||||||||| |||| |||||||||
Sbjct: 198 gaattcgtatccaatggctcacaatcatctttaatgccagctccaggggacctgacaact 257
Query: 65 catgtctctgtggtcacctatactctcaag--------ctactacccacccatataaa-t 115
||| ||||||||||||||| ||||| |||| |||| |||||| |||| ||| |
Sbjct: 258 catttctctgtggtcacctgtactcacaagcacatgccctac-acccactcata-aaagt 315
Query: 116 aaagataataaatcttaaaatgagagacaagtttcatttggtttcattattcaaatgaaa 175
||| |||||||||||||||| ||||||||||||||||| || ||||||||| ||||||||
Sbjct: 316 aaaaataataaatcttaaaaagagagacaagtttcattaggcttcattatttaaatgaaa 375
Query: 176 ccttattttgtctgatttatgaatctctttggatcagttttctgggttgcactttgtgta 235
||| ||||| |||||||| ||| ||| |||||||||||||| |||||| || ||||||
Sbjct: 376 cctgattttctctgatttctgagtctgtttggatcagttttttgggtttaaccttgtgtt 435
Query: 236 acaaggccacattccttttatctatcactctttcccccaacttgttgtttctccctcaga 295
||||| |||||||||||||||| ||||| || |||||| || |||||||| |||||||
Sbjct: 436 ccaaggtcacattccttttatctgccactcgtt-ccccaa-tt-ttgtttct-cctcaga 491
Query: 296 cttcattccagagattctatctatgtcctgtctttctccccttcttcctaaaaatccatc 355
||||| |||||||||||| |||||| | ||| |||||| ||||||||| |||||||
Sbjct: 492 cttcacaccagagattctacctatgt----t-tttttcccctacttcctaaacatccatc 546
Query: 356 ttttgctgccatccctgctcctctaagtcatatctccaattccttgctcact--atgcag 413
||||||||||||||||||||||| || || |||||||||| ||||||| | ||||||
Sbjct: 547 ttttgctgccatccctgctcctccaattcccatctccaatttcttgctc--ttcatgcag 604
Query: 414 accacagaatctaagtcctgtccattttagcctgtgtaatattagatgtatgcactgttc 473
| || |||| |||||||||| ||||||||| ||||| |||||||||||||| |||||||
Sbjct: 605 aacagagaagataagtcctgttcattttagcatgtgtgatattagatgtatgtactgttc 664
Query: 474 acagcctgagttgcaa-ctttcatcttgctttgatgttctttccaccatagtccatctct 532
||| ||||| ||| || |||||||| | ||||||||||| ||||||||||| || |||||
Sbjct: 665 acaacctgaattg-aagctttcatcgtcctttgatgttccttccaccatagcccgtctct 723
Query: 533 tccaacaatgtgttcactaaaagcatgtcatgtcacacgtatt-aattttta 583
|||| ||| ||||||||| | |||||||||||| ||||| ||| ||||||||
Sbjct: 724 tccaccaaagtgttcactcacagcatgtcatgtaacacg-atttaattttta 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 974
Length adjustment: 10
Effective length of query: 573
Effective length of database: 964
Effective search space: 552372
Effective search space used: 552372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no414_a06.g1 MSMg01no414_a06.g1 CHROMAT_FILE:
MSMg01no414_a06.g1 PHD_FILE: MSMg01no414_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:53 2005
(464 letters)
>mm_chrY_1271772_1272634
Length = 863
Score = 385 bits (199), Expect = e-111
Identities = 406/501 (81%), Gaps = 55/501 (10%)
Strand = Plus / Plus
Query: 1 agaaacatacagaggctgtgtactgcaagcaggtcttctgcaaaagcaat-----atata 55
|||||| | ||||||||| |||||||| ||||||||||||||||||||| |||||
Sbjct: 179 agaaacctgcagaggctgcctactgcaatcaggtcttctgcaaaagcaatacacgatata 238
Query: 56 atataagtactaaaattgatatcagtgctctacaatattctattctatgtgatgaaat-- 113
| ||| ||| || || | |||||||||||||| ||||||||||||||||||
Sbjct: 239 a-ata---actgaattttctgtcagtgctctacaa-----tattctatgtgatgaaatct 289
Query: 114 --------atctctctctctct-----------------t-tctctctctctctcaatat 147
|||||||||||||| | ||||||||||||||| ||
Sbjct: 290 ctctctcaatctctctctctctctctctctctctctctctctctctctctctctca--at 347
Query: 148 atatattcctctaacacttagtatgaataaagattctcttatattctctcctacaaaggg 207
|| || || ||||||||||||||||||||| ||||||||||| |||||| ||||| ||||
Sbjct: 348 atctactcttctaacacttagtatgaataatgattctcttatcttctctgctacataggg 407
Query: 208 gatgatattggcatgtcatctgcaacattcattcactttcctacacagtttgtgctttct 267
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 408 catgatattggaatgtcatctgcaacattcattcactttcctactcagtttgtgctttct 467
Query: 268 cttagcaatcaactaatatctaaa-tcacacatgcactcagattacaaagtaaggtatct 326
||||| |||||||||||||| ||| |||||||| ||||||||||||||| ||||||||||
Sbjct: 468 cttaggaatcaactaatatc-aaagtcacacattcactcagattacaaaataaggtatct 526
Query: 327 gagctcatgca-aactgttattctgagtcagagtaggggga--ggacaattccaaactgt 383
||||||| | |||||||||||||||| ||||| || || ||||| |||||| |||
Sbjct: 527 tagctcat--ataactgttattctgagtgagagt--ggagaaaggacacttccaatgtgt 582
Query: 384 agttacatccaagagcatggactttaacaacttgtgaatcagtagaagaaaagacaatgt 443
||||||| ||||||| |||| |||||| |||| || || |||||||||| |||| ||||
Sbjct: 583 agttacacccaagagtatggcctttaaaaactggtaaaacagtagaagatgagaccatgt 642
Query: 444 atagacag-ggttgtttcttt 463
||||| || |||| |||||||
Sbjct: 643 ataga-agaggttatttcttt 662
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 863
Length adjustment: 10
Effective length of query: 454
Effective length of database: 853
Effective search space: 387262
Effective search space used: 387262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
