Query= MSMg01no415_p23.b1 MSMg01no415_p23.b1 CHROMAT_FILE:
MSMg01no415_p23.b1 PHD_FILE: MSMg01no415_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:31 2005
(450 letters)
>mm_chrX_53520468_53521322
Length = 855
Score = 424 bits (219), Expect = e-123
Identities = 389/451 (86%), Gaps = 22/451 (4%)
Strand = Plus / Plus
Query: 8 ttcaggcagtctcattttagattttt-cctgctgctaagaccactagtgttctttggtac 66
||||||||| |||||||||| ||||| |||||||||||| || |||||||||| |||||
Sbjct: 208 ttcaggcagcctcattttag-tttttccctgctgctaagccccctagtgttctggggtac 266
Query: 67 attcaaccttactgatctccaggcgactagacttgtcaggatcagagtggaaactggata 126
|||| |||||||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct: 267 attcgaccttactgatctccaggtgactagacttggcatgatcagagtggaaactggata 326
Query: 127 ttttacaaccaatt-atctggtccacttgcctacctctggttatc-ccagtttctccacc 184
||| |||||| ||| | ||||||||||||||||| ||| || ||| | | ||||||||||
Sbjct: 327 tttcacaaccgattca-ctggtccacttgcctacttctagtcatctcaaatttctccacc 385
Query: 185 taaattcgttaatgataatttcctcatcatgcagcc--tgccatgattcacagacaggta 242
||||||| ||| |||||||||| ||| |||| |||| || |||||||||||| |||| |
Sbjct: 386 taaattctttactgataatttcttcaacatgaagcctatgtcatgattcacaggcaggca 445
Query: 243 caacaactgcttctgcct-cagtattaaattcaagtcctttctcttcttcagga-atgtt 300
| ||||||||||||| || ||||||||||||||||||| |||| |||||||||| ||||
Sbjct: 446 ctacaactgcttctg-ctgcagtattaaattcaagtccgttcttttcttcaggacttgtt 504
Query: 301 aatatttgaca-atatacaaatgcatttatctgaggaagaatgggctatgct-aacccat 358
|| |||||| | || || ||||||| || |||||||||||||||||||| || ||||| |
Sbjct: 505 aacatttga-agatgtagaaatgcaattctctgaggaagaatgggctatactgaaccctt 563
Query: 359 tgaagaagacactctacagtgttgtaatgctggtcatctacaagctaaccacctctctag 418
| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 564 tccagaagacactctacagtgatgtaatgctggacatctacaagctaaccacctctctag 623
Query: 419 gttaactggntaattataactcctttccttt 449
|| || | ||||||||||||||||
Sbjct: 624 gtaaa--g-------ataactcctttccttt 645
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 855
Length adjustment: 10
Effective length of query: 440
Effective length of database: 845
Effective search space: 371800
Effective search space used: 371800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no415_p23.g1 MSMg01no415_p23.g1 CHROMAT_FILE:
MSMg01no415_p23.g1 PHD_FILE: MSMg01no415_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:31 2005
(461 letters)
>mm_chrY_2791047_2791907
Length = 861
Score = 598 bits (309), Expect = e-175
Identities = 348/361 (96%), Gaps = 1/361 (0%)
Strand = Plus / Plus
Query: 96 ctttattgaatttctgtacacccacatacaacttctgaaacatatttttatactgctcat 155
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 296 ctttattgaatttctgtatacccacatacaacttctaaaacatatttttatactggtcat 355
Query: 156 ataatttgttgttgatcatgtccctgtaaagtaaagtaatgaaagcagtcaaatttatac 215
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 356 ataatttgttgttgatcatgtccctgtaaagcaaagtaatgaaagcagtcaaatttatac 415
Query: 216 aaataggaaaagaacgctcaaaaaaattatattgttcttttcatacaataaaaagaaaaa 275
||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||
Sbjct: 416 aaataggaaaagaacgctcaaaaaaattaaattgttcttttcgtactataaaaagaaaac 475
Query: 276 tagcagtaaaaaatcatcaaatgggaagtaattacagatttttttcctaagagattatca 335
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 476 tagcagtaaaaaatcatctaatgggaagttattacagatttttttcctaagagattatca 535
Query: 336 gagaagttttatttcatgttttagattttcaaaattaaagtttacagacagataaataga 395
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 536 gagaagttttattttatgttttagattttcaaaattaaagtttacagacagatagataga 595
Query: 396 tagatagatagatagatgatagatagatagatagatagatagatagatagatagatagat 455
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 596 tagatagatagatagatgatagatagatagat-gatagatagatagatagatagatagat 654
Query: 456 a 456
|
Sbjct: 655 a 655
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
