BAC Information

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BAC

Clone NameMSMg01-418G12
ChromosomeY (Build37)
Map Location 1,311,419 - 1,311,794
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418G12.T7 (MSMg01no418_g12.b1)MSMg01-418G12.TJ (MSMg01no418_g12.g1)
ACCAG513751AG513752
length750724
length of high quality
(start - end)
561 (74 - 634)469 (61 - 529)
definitionCHROMAT_FILE: MSMg01no418_g12.b1 PHD_FILE: MSMg01no418_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:36 2005CHROMAT_FILE: MSMg01no418_g12.g1 PHD_FILE: MSMg01no418_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCG
CGGAATTCACTCATTTGCTGATGGTGTGTTCATCATTGAATATACAGACT
CCTNGAAAGAGTCATACAAAATATGCTTCATTATATACTAGACAATTAGT
GTCATTTTGTTTGGCAATACAACATGTATGATTATGCCTCAGAATCATGA
GCAACTGGGCCATATGGGAAATATAATTAGTACATTTCTGCTGACTGAAG
ATCAGATGTGTTGAGTGTTATCATGTGTGCTGTTCATGAGAGGAAGCTGC
ATAGATGGTGAGTATAGATCAGAGAGGAACATCCAAGGAGGACACTATGT
AAGGAACCCTAGGAAGAGCACCATCACTGCTTTTAGCTAGTACACATATT
TTTAGAATCCCCACTTTCTAGGGTGGAAAAGAAAACTGTATTACTCTAAT
TTACTAAGTATGGTCATTTGATACATCAGTGATCATCATCAAGGTGAACA
GGTGTTGACAGAAGTTTGGGGACTCAGAAGAAGCCTGTTCTGGGAAAACC
CATTGCCTTCAAAGAACGGAGATTTCTGACCAGCAACACTGGATAAACAG
TCTACATTGGCAGCAGTAGCCCCATTGTGTCCAAATTAGTGGTTTTCAAT
CCACTAATCCATCCATAAGCAGCCTCCAAGCACTGACACCATTGCATACA
CTGGCTAGATTCTGCTGGAAGGACCCAGATTTACCTGTCTCTTGTGAGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CATCAAAAAAATTGTATGAAGTTCTCAAGGAATTAATTAATGTAGTTCTT
AATATACAATGTCTTTACTGAACATAAACAGACCACTTATATTTCAATCT
CCTAAATAGCAACTCATTTTATAGCACTTACATTACATTAAGTGCAAAAG
TAATCCAGAGATTATTTAAAATAAAGAAGGATCAGGGGATATGGCCCAGA
GACAATGCCATGTGTGTGTTCAAACATTCACCTACAACACCAGTGCTTAT
GATTTTGGGAGGGGCAGAGATAGGAAGATGACTGTGGCTTCCTGAAAGCC
AGCTCAGCAAGAAACCCAGTCACAAGGGGATAAGTTATGTAGGAAAAGAG
TAGATCACACTATACCCTTCCCTAGCCTCTGAACTTACCTGTACAGTTCT
CTATGCAGACTCACATAAATATGATTAACATATGCAAGAGGTTATTTTGC
ATAGCTTATATTCAAAAGCAATGTTGTTTTACACTAGAAACCTGAGGACT
TTATATCATTATAGTTTCTGGAGCAAACTCCCAAGATATAGATGATGGGT
ATATCTTCTTACTGTGCAAAGGAAACCTCAGTTAATTGTGTGTGGCAGTG
ACCCAAACAGCTTTCCTCCTCTATGTTCCTTTATAGAGCAAAGAATGATC
TGTAACTATGAACATATGAAAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_g12.g1 MSMg01no418_g12.g1 CHROMAT_FILE:
MSMg01no418_g12.g1 PHD_FILE: MSMg01no418_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:36 2005
         (469 letters)



>mm_chrY_1310929_1311797
          Length = 869

 Score =  290 bits (150), Expect = 1e-82
 Identities = 318/388 (81%), Gaps = 32/388 (8%)
 Strand = Plus / Minus

                                                                       
Query: 100 caactcattttatagcacttacattacattaagtgcaaaagtaatccagagattatttaa 159
           |||||| || ||||||| || |||| ||||||| ||||||||||||||||||| ||||||
Sbjct: 866 caactccttgtatagcagtttcattgcattaagggcaaaagtaatccagagatcatttaa 807

                                                                       
Query: 160 aataaagaaggatcaggggatatggcccagag--acaatgccatgtgtgtgttcaaacat 217
           ||||||||| || | | ||| ||||||||| |  |    |||| ||| ||| ||  ||||
Sbjct: 806 aataaagaaagacctgtggagatggcccaggggta----gccaagtgagtgatcccacat 751

                                                                       
Query: 218 tcacctacaacaccagtgcttatgattttgggaggggcagagataggaagatgactgtgg 277
           |||||||||||| ||||||||| ||  | |||||||||||||| ||||||||||||||||
Sbjct: 750 tcacctacaacaacagtgcttagga--tggggaggggcagagacaggaagatgactgtgg 693

                                                                       
Query: 278 cttcctgaaagcc------------agctcagcaagaaacccagtcacaagggga-taag 324
           |||||||||||||            |||||||||||| |||  ||||||| |||| ||| 
Sbjct: 692 cttcctgaaagccagccccactcctagctcagcaagagacctggtcacaa-gggagtaaa 634

                                                                       
Query: 325 ttatgtagga---aaagagtagatcacactatacccttccctagcctctgaacttacctg 381
           ||| |  |||   || ||| ||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 633 tta-g--ggagtgaaggagcagagcacacaatacccttccctagcctctgaacttacctg 577

                                                                       
Query: 382 tacagttctctatgcagactcacataaatatgattaac--atatgcaagaggttattttg 439
           ||||| ||| |||||| || |||||||||||||||||   ||||  |||||||||| |||
Sbjct: 576 tacaggtctgtatgcatacacacataaatatgattaaagtatat--aagaggttatgttg 519

                                       
Query: 440 catagcttatattcaaaagcaatgttgt 467
           ||||| |||||| |||||||||||||||
Sbjct: 518 catagattatatgcaaaagcaatgttgt 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)