BAC Information

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BAC

Clone NameMSMg01-420E02
ChromosomeY (Build37)
Map Location 1,305,962 - 1,306,151
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420E02.T7 (MSMg01no420_e02.b1)MSMg01-420E02.TJ (MSMg01no420_e02.g1)
ACCAG515164AG515165
length720739
length of high quality
(start - end)
190 (448 - 637)247 (71 - 317)
definitionCHROMAT_FILE: MSMg01no420_e02.b1 PHD_FILE: MSMg01no420_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:02 2005CHROMAT_FILE: MSMg01no420_e02.g1 PHD_FILE: MSMg01no420_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCAGAGGGAG
CGCGGGAATCATCTATTCCCGCAAGAGAGCCGGGCATGGGGGGACAAGCC
TTTAATCCCAGCACTCTCGAGGCACAGACAGGCAGATTTCTGAGATTGAG
GCAAGCCTGGGCTACACAGAGAGTTACAGGACAGCCTTGGGTACATAGAG
AAACCCTTTCTGGGAAAACCCCGAAAAAAAATAAAGGAGGTGTGCAGAGA
TCCTGTGAATCCTGGCCCTGGTGCCCGAACTTTGGGGAGTTGATCAGCAG
AATGGTCCGTGGTTTATCTTTTTTATTTAGAACGAAAGGCCTGGCCAGGG
TCCGGTATGACCTCCCCCCCCTAAAATTCCAAAAACCCCCCCTGGACTTT
CCGGGTTTCCGAAGGCAGGCCTAATTAAAGGGATAAAGAAGGGCTTGAAA
ATACTTCCCATTTCTGCTACCCTGNAAGTACTGCATCTTTTCATGATCAC
CCATATCCACACCAGACATGAGACAGAGGAAGTAAATGTCTAGAGACTGC
CTTTCTTGTCACTCACAGAAAGTAGCTGTCATGGTCTCCAGGGAAGTCAC
TCAGGTCTGACTTCCAGGAAGGAAGTATCTAAATGATTCTGTCAGAGGAC
CATTTTATGCTGGTGCTAAGATGTCTCTTTTGTGGGGGAAATAAAGAACC
TGGTACTTAGAATCCTAGGA
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCCAGCAAAATTCACTTGGACAACTGGATCCTTCTACGGC
AAAGCTTTTATTGCTTCAACATAAGGAAGACCCTGAACCCGGAAAATGGT
GCTGCTTATATAGCCCACAGCATGACGTTTCACCACCTGATGTGGTGTTA
CAGCACCTGATTAGTTGCTCGCCCATCACCCCATTACTATGCCGAAAGAT
GGTTATGACTGGGTGTGAATTTACTCTTGCACTTGTGCATAAGTCTTGTT
TACTAGTTAGGCACAGTTGTATTCAGCACCATCTTATAATGGCAATTGCT
CACGGCACAGCTCTCCACATAGATATAGATATAGATGATATAGATATAGA
GAGATAGAGATGGACAAGGACATGGACATATACATAGATACAGAGACATA
TAGATATAGATTAGATATAGCATTGAACATATATTATGATATAGATTTAG
ATATAGATATAAAGAGTTAGAGATAGATATAGATATAGTTAGAGATAGAT
ATAGAGATAAATATACTATATAGATGGATATAGTTTGCTTCCTCCTCTCC
TTTTTATTTCCCCCTTTTATTCCCTTTTTTTCCTCCTCCCCTCCCTATTT
TTTCTCCTTCTCTTTTTTTTCTCTCCTCTACTTTTCCTATCCCCCCTCAT
CTTTCTCCCTCCTTCTCTCCCATTCTATCTCCTCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_e02.b1 MSMg01no420_e02.b1 CHROMAT_FILE:
MSMg01no420_e02.b1 PHD_FILE: MSMg01no420_e02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:02 2005
         (190 letters)



>mm_chrY_1305762_1306351
          Length = 590

 Score =  354 bits (183), Expect = e-102
 Identities = 188/190 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaatacttcccatttctgctaccctgnaagtactgcatcttttcatgatcacccatatc 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 390 aaaatacttcccatttctgctaccctggaagtactgcatcttttcatgatcacccatatc 331

                                                                       
Query: 61  cacaccagacatgagacagaggaagtaaatgtctagagactgcctttcttgtcactcaca 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 cacacaagacatgagacagaggaagtaaatgtctagagactgcctttcttgtcactcaca 271

                                                                       
Query: 121 gaaagtagctgtcatggtctccagggaagtcactcaggtctgacttccaggaaggaagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gaaagtagctgtcatggtctccagggaagtcactcaggtctgacttccaggaaggaagta 211

                     
Query: 181 tctaaatgat 190
           ||||||||||
Sbjct: 210 tctaaatgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)