BAC Information

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BAC

Clone NameMSMg01-423N07
ChromosomeY (Build37)
Map Location 1,649,241 - 1,649,556
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143
Downstream geneLOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423N07.T7 (MSMg01no423_n07.b1)MSMg01-423N07.TJ (MSMg01no423_n07.g1)
ACCAG517894AG517895
length764744
length of high quality
(start - end)
498 (36 - 533)539 (64 - 602)
definitionCHROMAT_FILE: MSMg01no423_n07.b1 PHD_FILE: MSMg01no423_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:36 2005CHROMAT_FILE: MSMg01no423_n07.g1 PHD_FILE: MSMg01no423_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:36 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCCT
TTGCTAGACAACCAAAATGGCAGCTTACACCAACTATAGTTAGAAGGTCC
CCAAAACATACACAGAAAAAAAAAAATCTTGGTCTCTGTTCAATCAGAAA
TGATGCAATGATTCTCAAGAACCTAGAGACCCCAGGGTGTTTAGAAATCA
GATGGAATGGGTACATGCTCTTGGAGACAGGGGATGGCCAGTCGATATGG
CATGTGGAACAGTAGGAGGGTGGACAGGGTTCAATGAATGAATGAATTAA
TAAATAAAATTGAATACTGCCAAGTAACCACGCCCCATATACTCTAATTC
TTTAATCATAATCCAAGAAAACTCACATGTTCACATAACAGCACACTCAA
AAATATAACTAAAAAATACACACACACATATAACTGAAATTCCATGATTT
TGAAGTTCATTTTACAAAGAAATACAGTGGAACAGAGTTTTTCTTTTGTT
CCATTAATTTACATACATTTGTTCTCCTAATCTACCCAAAATATGGATTG
TTCTCCATAAAAAGGCCAAAAACTCCTAACATTAGTTTTATCTGGGGAAA
TCTCCCCACATAATTTTATCTAGAATCCCCCCACTTTATTACCTTTTTTA
AAATATTATTCTGGATTCCCGTTTTAATTACCCTAAATTTTAATTTTTAA
ATTTCCGCCATCGGTTGGAAACACGGAGCCTAAGGAAAAAATTCTAGGCA
CAGTGTTTTTTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXACTATTCTCTGTTTGCAGTTGTAAATGCTCGTGAGAG
CAACGAACTCCCTTTTTCAGATGGAAAAGGGTTACTGACAGACATGTCAG
GAGAAACCGGCTGCCACCCTTTGGGACATCCCAGGAGTTCTGAGGGAGTT
CTAGGGATACCTGGAGATCTCCTATCAGTGTGCCAAGTGAGAGTGTGCTC
ACTCGGCTGTCTGTTTCTGTTACTGGGTGCCAAGTGAGTGTGTGCTTTCT
TGGCCATCTTATTGGGGCCTGGTCTTGGTTATTGTAATCTTTTTTGTGTA
TATGTTTTTTTTTTTCCCTGTATGTGACTCTGATGATGGGACCAACTATT
ATCATGCCCCTTGGACTGACCCTTGATCACTCGACTGAAATTAAGACTAA
CACTCACATTCTCTCTGTGGATGTCTGAAATCGATTTTAGAGAACTTTCT
GATCTACAGAATGGCCAGCTTTGATGATAGTTGGCCACTAGAGGGCACTC
TTTGTTTGGTTCTGTTTTCAGCTCTTAATGTTGTTTTACAGAGGGGACCA
GGGTCTCAGCCAGATTACGTGCCATACATTCTCATCTAGAAAAATTTATC
ACAGGGGCCCCCCTCTCCCCTCCTGTTTAAAGCCTTTGGGTTAAAAAGAA
TAAACCCGGGCTCCCCAGTCCCTGGGCCTCTGCCCCCCCCGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_n07.b1 MSMg01no423_n07.b1 CHROMAT_FILE:
MSMg01no423_n07.b1 PHD_FILE: MSMg01no423_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:36 2005
         (498 letters)



>mm_chrY_1648665_1649560
          Length = 896

 Score =  308 bits (159), Expect = 8e-88
 Identities = 285/341 (83%), Gaps = 31/341 (9%)
 Strand = Plus / Minus

                                                                       
Query: 153 tgtttagaaatcagatggaatg-ggt----acatgctcttggagacaggggatggccagt 207
           |||||||||||   ||||  || |||    ||||||||||||||| ||||||||| ||||
Sbjct: 892 tgtttagaaat---atgg--tgtggtagggacatgctcttggagataggggatgggcagt 838

                                                                       
Query: 208 cgatatggcatgtggaacagtaggagggtggacagggttcaatgaatgaatgaattaata 267
            ||||||| |||| |||||||||||||||||||||||  |  || |||||||||||||| 
Sbjct: 837 agatatgggatgttgaacagtaggagggtggacaggg--c--tggatgaatgaattaatt 782

                                                                       
Query: 268 aataaaattgaatactgccaagtaacca-cgccccatatactctaattctttaatcataa 326
           |||||||  ||||| |||||||||||||  ||||| |||||||||||| |  ||||| ||
Sbjct: 781 aataaaaaagaatagtgccaagtaaccagggcccc-tatactctaattgtggaatcagaa 723

                                                                       
Query: 327 tccaagaaaactcacatgttcacataacagcacactcaaaaatataactaaaaaatacac 386
           ||||||||||||||||||| ||||||||| ||||||||||||              ||||
Sbjct: 722 tccaagaaaactcacatgtacacataacaacacactcaaaaa--------------acac 677

                                                                       
Query: 387 acacacatataactgaaattccatgattttgaagttcattttacaaagaaatacagtgga 446
           ||| || |||||||||||||  ||||||||||| ||||||||||||||||||||| | ||
Sbjct: 676 acatacctataactgaaattttatgattttgaaattcattttacaaagaaatacactaga 617

                                                    
Query: 447 acagagtttttcttttgttccattaatttacatacatttgt 487
           |||  ||||||||||||||||||||||||||||||||||||
Sbjct: 616 aca-tgtttttcttttgttccattaatttacatacatttgt 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 896
Length adjustment: 10
Effective length of query: 488
Effective length of database: 886
Effective search space:   432368
Effective search space used:   432368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)