BAC Information

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BAC

Clone NameMSMg01-426E08
ChromosomeY (Build37)
Map Location 2,889,636 - 2,889,876
singlet/doubletsinglet
Overlap genenone
Upstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426E08.T7 (MSMg01no426_e08.b1)MSMg01-426E08.TJ (MSMg01no426_e08.g1)
ACCAG519752AG519753
length794777
length of high quality
(start - end)		452 (39 - 490)456 (69 - 524)
definitionCHROMAT_FILE: MSMg01no426_e08.b1 PHD_FILE: MSMg01no426_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:45 2005CHROMAT_FILE: MSMg01no426_e08.g1 PHD_FILE: MSMg01no426_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
AGTAATTGGATTCCGTTTTAAGCACACCAGAGCTGTACTTGAATGTATGA
GACACACTCCTTACTCTCAAATGTCAGTTTTATACTTTCTTCATCAGAGG
GCCATGTCTCAGACCCCTCCAGTGCAGACAGAGAAAGAACAAAGTGTTTT
TATTCAAGGTCAGCAGACCCCTTTGTCATACCCTTAATGTCAGGGACTAC
TATGTTTAGAGGAAGTAAGGCTAAGGCCTTCTTCAAAAGATAATCCAACT
GGGTGTCAGCCCTCTTGAAATCATGGGATACTTTACTTCTAAGGGTGCGT
GACTTGATGGAGTTCCTATTTATGCTGGAAATATAAATTATCCCAGTTCT
AGTGGGGTACATCTGAAGCCCCCTGATGTGATTTCATCAAATCTATTGCA
CGCTGATAATAAAAGAGCCATATTAGTGGCCATATTAAGATATTGTTGAA
ATCTGAAGTCTTGCTTCTCATGTCATATGTCTCCGGATATCTTCATTCAT
TGAGGACCTATATGACATATTTGTTCTGAAGGAATAATTCTGAGGGCAAA
TAAAGAAAGTCTGAAAATTTGGGTTCTCTGAACCAATGCGGCCTAAACAC
TGGGGGAAGTCTAAACTATTTTGAAGGAGAAAGGGGGAATTTGTAACACC
CGTTAGTTTATTTAGGTAAAGATGGGACGGCTTATATTATTCTTTTCTCC
GCGATGTCTCTTACGTCGCAATAGCTCTCTACAATCATTAAAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAAAAAAAAACTTGTAATACTTACTTTAAACA
ATTCATACATTTACACCCCACAGCACTTCTTCATAACTGTACTACTTTTG
CTGAGATCCTTCTTCTTCCAAAATGGTCCCTCTCTTATTTTTATAATGGT
TCTCCTATTCTTTGTATGTATATCTGGAAAAAATCTCATGCAGGTGGTTG
TATTGTATTAGTTGCTATCTTTGTGTGATCACAAGGTCTAAAGGACCACA
ATCTGGTCTTGATCTACACATATAAGAGCATCTGACCCTGAATTGCTCTT
TTTCCTGAATCTACTTTTCCAGTTCAGGGATCACAAACACCACTTTTGAA
GTACTCTATCAAAATGGGAAAAAATTAAAATATTACACCATATCTTCATC
TGTTTCTACCTGAGGTGATATATTCTCATCTTTGGCAAATGCTGGGCTCT
GTACTATATAGACTAAGAAAATGGAAACATAATATGCTATATTAGTAAAA
GGGAATAAAGTATTAATGATTTGAATTTCCCAGGAAATACCACCAATGTG
AATTTTTGAAACAGCTTTTTAAAATGACTTATTTTCTTTCTTGAAATTCG
GTATAGGGATAAATAGAAAGTAATTTCTCTTTATCTTTGGTCTCTGTTTA
TCTCTTTCATTTATTTCATAATCCCTTTCTTCTTCTTACATGATGTTGCC
TTTTTTTACCATTTTATCCTATCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_e08.g1 MSMg01no426_e08.g1 CHROMAT_FILE:
MSMg01no426_e08.g1 PHD_FILE: MSMg01no426_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:45 2005
         (456 letters)



>mm_chrY_2889434_2890288
          Length = 855

 Score =  360 bits (186), Expect = e-103
 Identities = 228/242 (94%), Gaps = 1/242 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   aaaaaaaacttgtaatacttactttaaacaattcatacatttacaccccacagcacttct 62
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaaaaaaacttgtaatatttactttaaacaattcatacatttacaccccacagcacttct 384

                                                                       
Query: 63  tcataactgtactacttttgctgagatccttcttcttccaaaatggtccctctcttattt 122
           |||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 383 tcataactgtactacccttgctgagatccttcttcttcccaaatggtccctctcttattt 324

                                                                       
Query: 123 ttataatggttctcctattctttgtatgtatatctggaaaaaatctcatgcaggtggttg 182
           |||||||||||||||| |||||||| ||||||| |||||| | |||||||||||||||||
Sbjct: 323 ttataatggttctccttttctttgtgtgtatatatggaaaca-tctcatgcaggtggttg 265

                                                                       
Query: 183 tattgtattagttgctatctttgtgtgatcacaaggtctaaaggaccacaatctggtctt 242
           ||||||| | |||||||| |||||||||  ||||||||||||||||||||||||||||||
Sbjct: 264 tattgtactcgttgctatgtttgtgtgaaaacaaggtctaaaggaccacaatctggtctt 205

             
Query: 243 ga 244
           ||
Sbjct: 204 ga 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 855
Length adjustment: 10
Effective length of query: 446
Effective length of database: 845
Effective search space:   376870
Effective search space used:   376870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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