BAC Information

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BAC

Clone NameMSMg01-429L08
ChromosomeY (Build37)
Map Location 1,266,148 - 1,266,782
singlet/doubletsinglet
Overlap genenone
Upstream geneJarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429L08.T7 (MSMg01no429_l08.b1)MSMg01-429L08.TJ (MSMg01no429_l08.g1)
ACCAG522373AG522374
length735743
length of high quality
(start - end)		627 (40 - 666)417 (75 - 491)
definitionCHROMAT_FILE: MSMg01no429_l08.b1 PHD_FILE: MSMg01no429_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:16 2005CHROMAT_FILE: MSMg01no429_l08.g1 PHD_FILE: MSMg01no429_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:17 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ATCAATTAAATTGTATGAAGTTCTCAAGGAATTAATTAATGTAGTTCTTA
ATATACAATGTCTTTACTGAACATATACAGACCACTTATATTTCAATCTC
CTAAATAGCAACTCATTTTGTAGCACTTACATTACATTAAGTGCAAAAGT
AATCCAGAGATTATTTAAAATAAAGAAGGATCAGGGGATATGGCCCAGAG
ATAATGCCATGTGTGTGTTCAAACATTCACCTACAACACCAGTGCTTATG
ATTTTGGGAGGGGCAGAGATAGGAAGATGACTGTGGCTTCCTGAAAGCCA
GCTCAGCAAGAAACCCAGTCACAAGGGGATAAGTTATGTAGGAAAAGAGT
AGATCACACTATACCCTTCCCTAGCCTCTGAACTTACCTGTACAGTTCTC
TATGCAGACTCACATAAATATGATTAAAATATGCAAGAGGTTATTTTGCA
TAGCTTATATTCAAAAGCAATGTTGTTTTAGACTAGAAACCTGAGGACTT
TATATCATTATAGTTCCTGGAGCAAACTCCCAAGATATAGATGATGGGTA
TATCTTTTTACTGTGCAAAGGAAACCTCAGTTAAGTGTGTGTGTCAGTGA
CTCCAAACAGCTTTCCTCCTCTATGTTCCTTTATATAGCATAGAATGATC
TGTAAATAATGAAAATATGAAAACAAAGCTTTTTT

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTGGTTAAATTGTTTTGAAATGTCA
GTCATGGGTCTTTGATGAAGGCTTTGGTCCACAGTACAATGTTCATAGGT
AGTACAATATGCTCTCTGAAAAGTGATTGGAAACTGAGGGCTTTAATCAA
TGAGTTAATCAATCAATGGATGTGCATGGAATGGGTAAAAAACTTGTAAA
TGAACGTGGTCATTTGGACATGTCTTCAAAGCTTTTTATTGTCTTTGTCC
CTTCTTGTGTTAATGCTGACTATCTGCCAATAAGTTGAACAATTTTGCTG
CTTCATGCCCCTTTCATATTCATGTGATCATGGATCCTTCTTTCATTTGT
GATAGTAACATGTCAGGTTCAGAGGAAACATGGCTTAATTCTTTAATTTT
TTTTCTAGAAACGGCATGCTAAGTGTAGAACCAATGTTACCTAGCTGTTG
TAGTTGGAATATTCAGCCACGGAATCTGTTGCCTTTGAGACTCAAGAACC
TTGCTGCTACTCACACCCACTGGTCCTTTTTTCTGAAATCTCTATTGGCA
TTTTAGTAGATTTTTAAATCCTATTGAAGTTACCCCAAAAATGGACGGAA
TAAATGAACGTTGTCCGATATGTGTTTTTACAACCTCCCAAACTTTCCCC
CTTTTAAACCAAAATTTTTCCCCTTGGCCTCCCCTATTCTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_l08.b1 MSMg01no429_l08.b1 CHROMAT_FILE:
MSMg01no429_l08.b1 PHD_FILE: MSMg01no429_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:16 2005
         (627 letters)



>mm_chrY_1265953_1266982
          Length = 1030

 Score =  571 bits (295), Expect = e-167
 Identities = 549/647 (84%), Gaps = 37/647 (5%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattccatc-aattaaattgtatgaagttctcaaggaattaattaatgtagttcttaata 64
           ||||||||| || || |||||||||| |||||||||||||||| || |||||||||||||
Sbjct: 196 aattccatcaaaatatattgtatgaaattctcaaggaattaatgaaagtagttcttaata 255

                                                                       
Query: 65  tacaatgtctttactgaacatatacagaccacttatatt-tcaatctcctaaatagcaac 123
           ||| |||||| |||||||||||||||||||||||||||| || |||||||||||| ||||
Sbjct: 256 taccatgtctgtactgaacatatacagaccacttatattgtc-atctcctaaataacaac 314

                                                                       
Query: 124 tc--attttgtagcacttacattacattaagtgcaaaagtaatccagagattatttaaaa 181
           ||  |   | ||||| || |||| ||||||| |||||||| |||||||||| ||||||||
Sbjct: 315 tccta---tatagcagtttcattgcattaagggcaaaagtcatccagagatcatttaaaa 371

                                                                       
Query: 182 taaagaaggatcaggggatatggcccagagataatgcc-atgtgtgtgttcaaacattca 240
           |||||||||||||||  | ||||||||| | ||| ||| || ||| || ||| |||||||
Sbjct: 372 taaagaaggatcaggcaagatggcccaggggtaaagccaat-tgtttggtcagacattca 430

                                                                       
Query: 241 cctacaacaccagtgcttatgattttgggaggggcagagataggaagatgactgtggctt 300
           |||| |||| ||||||| | ||  | |||||||||||||| || |||| |||||||||||
Sbjct: 431 cctataacaacagtgctcagga--tggggaggggcagagacagaaagaagactgtggctt 488

                                                                       
Query: 301 cctgaaagccagc------------tcagcaagaaacccagtcacaaggggataagttat 348
           ||||||||| |||            |||||||||||||| |||| ||||| | || ||| 
Sbjct: 489 cctgaaagcaagcctcactcctaggtcagcaagaaaccctgtcataagggaacaaatta- 547

                                                                       
Query: 349 gtagga---aaagagtagatcacactatacccttccctagcctctgaacttacctgtaca 405
           |  |||   || ||| ||| |||||| |||| |||||| ||||||||| |||||||||||
Sbjct: 548 g--ggagtgaaggagcagaacacactgtacctttccctggcctctgaatttacctgtaca 605

                                                                       
Query: 406 gttctctatgcagactcacataaatatgattaaaatatgcaagaggttattttgcatagc 465
           | ||| |||||| || |||||||||||||||||| ||| |||||||||| ||||||||| 
Sbjct: 606 ggtctgtatgcacacacacataaatatgattaaagtatacaagaggttactttgcataga 665

                                                                       
Query: 466 ttatat-tcaaaagcaatgttgttttagactagaaacctgaggac-tttatatcattata 523
           |||||| | ||||||||||||||||||| ||||| |||||||||| ||||||||||||  
Sbjct: 666 ttatatgt-aaaagcaatgttgttttagcctagagacctgaggacttttatatcattagg 724

                                                                       
Query: 524 gttcctggagcaaactcccaagatatagatg---atgggtatatctttttactgtgcaaa 580
           | ||||||||||||||||| | ||||||| |   ||||||||||||| ||||||||||||
Sbjct: 725 ggtcctggagcaaactccccatatataga-gagaatgggtatatcttcttactgtgcaaa 783

                                                          
Query: 581 ggaaacctcagttaagtgtgtgtgtcagtgactccaaacagctttcc 627
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 ggaaacctcagttaagtgtgtgtgtcagtgactccaaacagctttcc 830


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1030
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1020
Effective search space:   629340
Effective search space used:   629340
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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