BAC Information

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BAC

Clone NameMSMg01-430P02
ChromosomeY (Build37)
Map Location 1,792,399 - 1,792,815
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137
Downstream geneLOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430P02.T7 (MSMg01no430_p02.b1)MSMg01-430P02.TJ (MSMg01no430_p02.g1)
ACCAG523316AG523317
length780775
length of high quality
(start - end)
421 (53 - 473)427 (82 - 508)
definitionCHROMAT_FILE: MSMg01no430_p02.b1 PHD_FILE: MSMg01no430_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:03 2005CHROMAT_FILE: MSMg01no430_p02.g1 PHD_FILE: MSMg01no430_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTCTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGGTCCTTAATAATTGAGACAGCAGGTCCTCCTAAAGG
GATACTCTCCTCTTCAGCCTCCTTCAGTCTTTCTCCAATTCCCCAATGGT
TCAGCAGATTCTGTCCATTGGTTGGTTGCAGACATATGCATCTGATTGTT
TCAACTGCTCATTAGGTCTTCAGAAGTGCATTCATGCTAGTATTCACATT
ACAATTATGTGAATTCAGAAGCCAGCAGAGTTCGTGGACTGCAAGCAGGT
CTTCTGAAAAAGCAATGCATGATATAATTACCTGAATTTTCTGGCAGTGC
TCTTCAATATTGTGTTCTACGTGATGCAATATTCCACTCTCTTTCTCTAT
CTCTGTCTCTGTCTCTGTCCCTCTCTGTCTCTGTCTCTCTCTGTCTCTTT
GTCTCTCTCTCTGTCTCTCTGTATCTGTCTCTGTCTCTGTCTCTGTCTCT
GTCTCTCTCTCTCTCTCTCTCTCTTTTCCTCTCTCTCTGTGTGTCTCTCT
CAAATCTATCCTCCTACACTCATCAAGAATAAAAGAGTCCCCTATCTTTC
TTTCACCAAAGGGATGAACAATTTTACTGTTCCTCCTCACTTTGTTTCTC
TTGAACTGTTATTTCTTAACTCCTTTTTTTTACTTTTTGTGTCCCTCCTT
ACAATTTCCTTTCTTTTTCCATTGTAGTAATCTCTTCCAATTTAATCACA
TTTCTTCCTTATACACTCTTCCCATCTTCC
NCCTCGGATGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCATACACCTAAAATA
AAAAAAAAAAAAAGAAGAAGAAGAAGAAAAGAAAAGAAGAGAAAAGAAAA
GAAAAGAAAGCCCAGGATTTAACTTTAATCTAAATGGTCAGAAACCAGAA
GGAGTCCCACTAAAATCTGGGACTGGACAAGGCTGCCCACTTTCTCCCTA
CCTATTCAATAGAGTACTTGAAATACTAGCCAGAGCAATTACACACATTA
AAAAAAAAAAAAAAAAAAAAAAAACCAAAAACCGAAAACAGATGAATACA
AATTGGAAAGGAAGAAGTCAAAATTTCTCTATTTCCAGAAGATATGATAG
CATGTATCTATGAGCCCAAAAATTACAACAGAGAAAAGCTAAACCTGAGA
CACATTTTCAGCTTAGGAGCTGAATTTAGAATTAATTTGAACATAACAGG
GGAATTTCTCTGCGGAAAAGAAAATAGTATGAGAAAGAAATTAGGGAAAA
ACATGCTTCTTAGTAGTCCCAATAATATAAAATTCCTTGGGGGGGATCTG
AAAAAGGGAAAATATGTATGGAAAAAACTTCACGTTTTCTTCAAAAAAAA
ACCCAACGAAGACCCTTGCAGACGGGTAAAATCCCCCCGGCTCAAGAATC
TGGCCGGAATCACAATACGAAAAATGGGGTTCTCTTTTTCAACATACTCT
CGCCATTGTCCGCGCCCTCCTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_p02.b1 MSMg01no430_p02.b1 CHROMAT_FILE:
MSMg01no430_p02.b1 PHD_FILE: MSMg01no430_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:03 2005
         (421 letters)



>mm_chrY_1792098_1792918
          Length = 821

 Score =  601 bits (311), Expect = e-176
 Identities = 393/423 (92%), Gaps = 13/423 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctggtccttaataattgagacagcaggtcctcctaaagggatactctcctcttca 64
           ||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| |
Sbjct: 718 gaattctggtcctgaataattaagacagcaggtcctcctaaagggataccctcctcttaa 659

                                                                       
Query: 65  gcctccttcagtctttctccaattc-cccaatggttcagcagattctgtccattggttgg 123
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 658 gcctccttcagtctttctccaattcacccaatggttcagcagattctgtccattggttgg 599

                                                                       
Query: 124 ttgcagacatatgcatctgattgtttcaactgctcattaggtcttcagaagtgcattcat 183
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 598 ttgcagacatatgcatctgattgtttcaactgctcattaggtctgcagaagtgcattcat 539

                                                                       
Query: 184 gctagtattcacattacaattatgtgaattcagaagcca-gcaga-gttcgtggactgca 241
           ||||||||||||||||||||||||||||||||| || || ||||| ||| | ||||||||
Sbjct: 538 gctagtattcacattacaattatgtgaattcaggag-cacgcagaggtt-gcggactgca 481

                                                                       
Query: 242 agcaggtcttctgaaaaagcaatgcatgatataattacctgaattttctggcagtgctct 301
           ||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 480 agcaggtcttctgcaaaggcaatgcatgatataattacctgaattttctgtcagtgctct 421

                                                                       
Query: 302 tcaatattgtgttctacgtgatgcaatattccactctctttctctatct--ctgtctctg 359
           |||||||||| ||||||||||||||||||||| |||||||||||| |||  |||||||| 
Sbjct: 420 tcaatattgtattctacgtgatgcaatattcctctctctttctctctctgtctgtctctc 361

                                                                       
Query: 360 tctctgtccctctctgtctctgtct--ctctctgtctctttgtctctctctctgtctctc 417
           | |||||| |||||||||||| |||  ||||||||||||  ||||||||||||  |||||
Sbjct: 360 tgtctgtctctctctgtctctctctgtctctctgtctct--gtctctctctct--ctctc 305

              
Query: 418 tgt 420
           |||
Sbjct: 304 tgt 302


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)