BAC Information

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BAC

Clone NameMSMg01-433K08
ChromosomeY (Build37)
Map Location 1,588,649 - 1,588,894
singlet/doubletsinglet
Overlap genenone
Upstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
Downstream geneLOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433K08.T7 (MSMg01no433_k08.b1)MSMg01-433K08.TJ (MSMg01no433_k08.g1)
ACCAG525380AG525381
length776752
length of high quality
(start - end)
247 (75 - 321)243 (71 - 313)
definitionCHROMAT_FILE: MSMg01no433_k08.b1 PHD_FILE: MSMg01no433_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:48 2005CHROMAT_FILE: MSMg01no433_k08.g1 PHD_FILE: MSMg01no433_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:48 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAAATCCGCGG
AATTCACTATTGTTTTCTAGAAGATTTCAATATCATATGAAGTACCAGAA
AAATGACTGAAAAATGACAGTGGTCGAGATGTGTTTAGAATCATTAAATT
ACACACTTAAAAATAAATAAATCAATGGATTTATATAGTACATAAATAAA
ACTCCAATAAAACTTCTGAAAAGGCTTAACTAAATGTGATGCTTCTCATG
TGAGTTGTTATTTGTCATAGCACCTGTGATTTAGCTGTTAATAGTAGTGG
GTTTTATTACTTATGAATCATATTCTATTTTTCCATGAAGGGGTAACACT
CCATTCCCTCAGGATAAATACACCAATTAAAAGCCATTGGATTAACTGAT
GATAACTTTTTCTGGTTACACCCCACTTTTTTTTTTTTTCCCCCCACCTG
TATCTTTTTTTCTTAAACTGCCCCCCTTTCTTTCTATGTCCCTTTTTTTT
CCCCCCCCAACTCCTTTTTTTCTTTCCTGCTTCTTTATTCTTTTTCTCCC
CCTTCTTATTTTCCCCCTTCCCCCCTTTTTTTCCTCCCCACCCTTTTTTT
TACCCCCTTTCCTTTCTAATTCCCCTTTTTTTTTTATTTTCCCCCCTTTC
TTTTTTCTTTTCCCTCCTTTTTTTTCCCCGCCCCTTCTTTTTCTCTTCCT
CTCTTTTATCCCTCCCACTCCTTCTTTTCTCTTCCCCCCCCTTTCCCTTT
CTTTTTGTTTTCCACTTTCTTTCTTN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATGACAACCTGGGCTAAACAGAGAATCCC
TGCCTCTAAAAAACAAAAAACAATAAACAAATAAAGAGAAAATGAATGAC
ACACAGGCATACAGAAGAGGACTGGTCCCAAAGACAGCTCTGTCCTAAAT
ATACTAGAGCACATTGCTTCACAAAATGAATTCTGAACATGCTCTCACAT
AGTGCATTTGAATATACTTTCTAGGTTAACCCCATATGATCACAAGAAAC
AAAAGGTAACAAGAATATCAGAGTCAGAAGTATATCTCAGACTCATGTCA
AAGACAGTCTGGGAGGCACACCATGCTTCGGTTTTCAAAGTTCAATAGAG
TGGTTCTCCACCTTTTTAATACTGCGGTTCCTTCACATATATACTTCCTT
ATGCTGTGTGGTGCCTCCACCGTAACACTATTTTTTGCCGTTTCCCAACT
GACCCGCCTCACTCGAATTAACCGTAACATATTTTTTTGACCACTCTTTA
CTCCTTTACCTTCCCTGGCGCATTTTCCCTTTGCCCCCTTCCTTCCCTAT
TTGGGTTCACATCTCGCTCTGCCTCTATTATATTTTCCCCCCCCCCTTTG
CTTTCTTTCACCTCCCCCCTTTTTCCCTATCCCCTTTCCCCTCACTTCCC
CCTTTTTCATTTTCCTCTCCCCTTCCCCCTTTTTCCCTTTTTCTTTTCCT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_k08.b1 MSMg01no433_k08.b1 CHROMAT_FILE:
MSMg01no433_k08.b1 PHD_FILE: MSMg01no433_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:48 2005
         (247 letters)



>mm_chrY_1588449_1589095
          Length = 647

 Score =  194 bits (100), Expect = 6e-54
 Identities = 212/254 (83%), Gaps = 16/254 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcaatatcatatgaagtaccagaaaaatgactgaaaaat-gacag--tggtcg-agat 56
           ||||||||||||| |||||| ||| |||||||  | ||||| || ||   ||| | | ||
Sbjct: 201 tttcaatatcataagaagtagcag-aaaatga-gggaaaatgga-aggaaggt-gaaaat 256

                                                                       
Query: 57  gtgtttagaatcattaaattacacacttaaaaataaataaatcaatggatttatatagta 116
           |||||||||||||||| ||||||||||||||||||||||  ||||||||||| | |||||
Sbjct: 257 gtgtttagaatcattacattacacacttaaaaataaatatgtcaatggatttctttagta 316

                                                                       
Query: 117 cataaataaaactccaataaaacttctgaaaaggctt----aactaaatgtgatgcttct 172
             ||||| | ||| ||||||| || ||||||||||||    |||    |||||| |||||
Sbjct: 317 tgtaaattatacttcaataaagctgctgaaaaggcttggccaac----tgtgatacttct 372

                                                                       
Query: 173 catgtgagttgttatttgtcatagcacctgtgatttagctgttaatagtagtgggtttta 232
           | ||||||||| ||| |||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 373 cgtgtgagttggtatgtgtcatagcatctgtgatgtagctgttaatagtagtgggtttta 432

                         
Query: 233 ttacttatgaatca 246
           ||||  ||||||||
Sbjct: 433 ttacagatgaatca 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)