BAC Information

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BAC

Clone NameMSMg01-437D01
ChromosomeY (Build37)
Map Location 1,436,845 - 1,437,343
singlet/doubletsinglet
Overlap genenone
Upstream geneUty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2
Downstream geneUbe1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437D01.T7 (MSMg01no437_d01.b1)MSMg01-437D01.TJ (MSMg01no437_d01.g1)
ACCAG528081AG528082
length758747
length of high quality
(start - end)		418 (49 - 466)499 (80 - 578)
definitionCHROMAT_FILE: MSMg01no437_d01.b1 PHD_FILE: MSMg01no437_d01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:29 2005CHROMAT_FILE: MSMg01no437_d01.g1 PHD_FILE: MSMg01no437_d01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGA
TTTTCAGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTC
ATCTATCTGATTTAGGATAGGTAAAGATCCTTTTCCAATTTGTTGGTGGC
CTTTTTGTGTTCTTGATGGTTTCACTGTGTCCCTGTTTAGTTTCTGTTTC
CATGACCTCTCTCCATTGGTTAAAGTGGTGTCCTATCTCGTTGTACTAAG
GTCAAAACTGAGTGGATTAAGGAACTTCACATAAAACCAGAGACACTGAA
ACTTATAGAGGAGAATGTAGGGGAAAAGCCTCCAAGATATGGGTACAGGG
GAAAAGTTCCTGAATAGAACAGCAATGGCTTGTGCAGTAAGATTGAGAAT
CGATAAATGGGACCTCATAAAGTCCAGGGCCCCCAATGGAGGAGCTAGAG
AAAGTACCCAACGAGCTAAAGGGATCTGCAACCCTGTACGTGGAACAGCA
TTATGAACTAATCAGTACCCCTGATCTCTTGACTCTAGCTGCTTATGGTC
TAGTCGGCCTTTCCCTGGAATGAGAGGTTTTATTGGACTTGCCTACTTTT
TATGTCCCCTTTTTAGTTGCAACGTCTGGCCCCTATACGTGTTAATTGTT
TTGGTTAGGTTTACTTTCCCCTTTACTCCTTTCGATATTTCTCCTTCTTC
TCTTTCTG

CCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGATCTGCAGAGTCATAATT
TGACTAATTTTTCTATTTGTACCAATTTTAGTCTGTCCTTATGATTCTGG
ATATTGCTTTTAGCACTGTCTTGAAAAGGAATGGAATTGGTGGACATGCC
TGTTTCATTCCTGATGGGATTACTAATCGAATTTAATTAGATTTTTTTCT
CTATTTGATTGCTCATTGGTCTTAATACCCTTACTATCATTGATAATTTA
CAAACTCATATATGGACACTAAAATGTATGTGAAAAAAAAACAGACCTAT
TTCAGAATTATATTGTCTTCAAGGAGAGAAATATTCTGAAAAAAAATGAA
TAACATGGTAGGGAAGATATATACTTATAAAATGCTTGAAGTACAATGTT
TACTACTTTTGGCCAGAAATAAAGACAGACCACATCCTCCCGGAACATGT
TCAACTTTAAAAACCTTATTGAATCACATTAACCATTACTAGAGTAGTGA
ATTCAAATCTCATTTAAATTCCCTGGGGAGTACAGGAATCTTTGAATAGA
CTTGGACTATCCTGAGGCCTTTAAGTGAATGATGTCCCAATGCGTAATAC
CGCAAACATTGGAAGGTAGCAGGAGTTCTGTGATCCCCATATTGGCTCCG
GCTTTAAAATGGCCACTCCAGCCCTGTTCTTGGTCATTTTCGTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_d01.g1 MSMg01no437_d01.g1 CHROMAT_FILE:
MSMg01no437_d01.g1 PHD_FILE: MSMg01no437_d01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:29 2005
         (499 letters)



>mm_chrY_1436645_1437543
          Length = 899

 Score =  965 bits (499), Expect = 0.0
 Identities = 499/499 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgatctgcagagtcataatttgactaatttttctatttgtaccaattttagtctgtcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgatctgcagagtcataatttgactaatttttctatttgtaccaattttagtctgtcct 260

                                                                       
Query: 61  tatgattctggatattgcttttagcactgtcttgaaaaggaatggaattggtggacatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgattctggatattgcttttagcactgtcttgaaaaggaatggaattggtggacatgc 320

                                                                       
Query: 121 ctgtttcattcctgatgggattactaatcgaatttaattagatttttttctctatttgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtttcattcctgatgggattactaatcgaatttaattagatttttttctctatttgat 380

                                                                       
Query: 181 tgctcattggtcttaatacccttactatcattgataatttacaaactcatatatggacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctcattggtcttaatacccttactatcattgataatttacaaactcatatatggacac 440

                                                                       
Query: 241 taaaatgtatgtgaaaaaaaaacagacctatttcagaattatattgtcttcaaggagaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaatgtatgtgaaaaaaaaacagacctatttcagaattatattgtcttcaaggagaga 500

                                                                       
Query: 301 aatattctgaaaaaaaatgaataacatggtagggaagatatatacttataaaatgcttga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatattctgaaaaaaaatgaataacatggtagggaagatatatacttataaaatgcttga 560

                                                                       
Query: 361 agtacaatgtttactacttttggccagaaataaagacagaccacatcctcccggaacatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtacaatgtttactacttttggccagaaataaagacagaccacatcctcccggaacatg 620

                                                                       
Query: 421 ttcaactttaaaaaccttattgaatcacattaaccattactagagtagtgaattcaaatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcaactttaaaaaccttattgaatcacattaaccattactagagtagtgaattcaaatc 680

                              
Query: 481 tcatttaaattccctgggg 499
           |||||||||||||||||||
Sbjct: 681 tcatttaaattccctgggg 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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