Query= MSMg01no437_f15.b1 MSMg01no437_f15.b1 CHROMAT_FILE:
MSMg01no437_f15.b1 PHD_FILE: MSMg01no437_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:43 2005
(569 letters)
>mm_chrY_2603455_2604424
Length = 970
Score = 153 bits (79), Expect = 3e-41
Identities = 97/103 (94%), Gaps = 1/103 (0%)
Strand = Plus / Minus
Query: 5 gaattcatctctacctggttttgattcccatatcctgagattaaagtcctttctaagcag 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gaattcatctctaactggttttgattcccatatcctgagattaaagtcctttctaagcag 248
Query: 65 atctcaacactttt-ttttaaaattttctgtctcacagttctt 106
| ||||||| |||| |||| ||||||||||||||||| |||||
Sbjct: 247 acctcaacatttttgtttttaaattttctgtctcacaattctt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 970
Length adjustment: 10
Effective length of query: 559
Effective length of database: 960
Effective search space: 536640
Effective search space used: 536640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no437_f15.g1 MSMg01no437_f15.g1 CHROMAT_FILE:
MSMg01no437_f15.g1 PHD_FILE: MSMg01no437_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:43 2005
(588 letters)
>mm_chrY_1655631_1656613
Length = 983
Score = 522 bits (270), Expect = e-152
Identities = 507/592 (85%), Gaps = 26/592 (4%)
Strand = Plus / Plus
Query: 1 aaaacaaacaaaatctcttcaatctgtctcaccaatcatacattaggtccaatg-cttgg 59
|||||||||||||| ||||||| ||||||| |||| || |||||||||||||| | |
Sbjct: 201 aaaacaaacaaaatgtcttcaaagtgtctcagcaattatgcattaggtccaatgtc-tca 259
Query: 60 gtgctttctgtttcaggctcacaatgatcaatggtatatacttt-ctaggttgtataact 118
||||| || | ||||||||||| ||| |||||| |||| ||| ||| ||||||||||
Sbjct: 260 gtgctctcagcttcaggctcac---gattaatggtttata-tttgctaccttgtataact 315
Query: 119 gcacttca-tttctctaccaggaacctttcctcagattctgtcctcatcaagaatcccat 177
||||| || ||| |||||| |||| ||| |||||||| ||||||||| |||| || |||
Sbjct: 316 gcactacagttt-tctacctggaaacttgcctcagatcctgtcctcagcaaggat--cat 372
Query: 178 -ctaataccatcagacacttctatgc-atcagagggaacaaggtctagctgtgtgccttg 235
| || ||||||||| | |||||||| | |||||||||||| ||||||||||||||| ||
Sbjct: 373 gc-aacaccatcagaaaattctatgcta-cagagggaacaaagtctagctgtgtgccatg 430
Query: 236 caggttgggtagagcactgtcaatatcccttctcctccagcaaaccctctcaag-gctca 294
||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 431 cagtttggttagagcactgtcaatatcccttctcctccagcaaaccctctcaaatgctca 490
Query: 295 caacggttgtcttccaggataaaatctgattgcctaagagaaggagcaaatcatctctgc 354
||| | |||||||||| || ||| ||||| ||||||| |||||||||||| |||||| |
Sbjct: 491 caaagtttgtcttccaagacaaa-tctgagtgcctaaaagaaggagcaaagcatctccac 549
Query: 355 ttgctctaatgtctaaatgacattgcagattaagaaaaaacctag-agcttccccaagat 413
|||||| ||| |||||||| |||||||||||||||||| ||||| || |||||||||||
Sbjct: 550 ttgctccaatatctaaatgccattgcagattaagaaaatccctagcag-ttccccaagat 608
Query: 414 tctcagtccgggagcatttggacaatccattactttcatagggtccaaaattgtttgaat 473
||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct: 609 tctcagtccaggagcatttgggcaatctattactttcatagggtccaaacttgtttgaat 668
Query: 474 tctacagaccaatgaattgtcccattagaagccacctttccagcaggtagcagcagctcc 533
||| |||||||||| ||||| ||||||||||||| || ||||||||||||||| |||||
Sbjct: 669 tctgcagaccaatgcattgttccattagaagccaactcaccagcaggtagcagctgctcc 728
Query: 534 aactgttgtctccaaaggcagttaaacaaaagcaacctgaagaggcaggtga 585
||||| ||||||||| |||| |||||||||||| |||||||||||
Sbjct: 729 aactgctgtctccaatggcacctaaacaaaagca-------gaggcaggtga 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 983
Length adjustment: 10
Effective length of query: 578
Effective length of database: 973
Effective search space: 562394
Effective search space used: 562394
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
