BAC Information

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BAC

Clone NameMSMg01-441I03
ChromosomeY (Build37)
Map Location 2,603,659 - 2,603,761
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236
Downstream geneEG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441I03.T7 (MSMg01no441_i03.b1)MSMg01-441I03.TJ (MSMg01no441_i03.g1)
ACCAG531373AG531374
length726743
length of high quality
(start - end)
550 (55 - 604)528 (83 - 610)
definitionCHROMAT_FILE: MSMg01no441_i03.b1 PHD_FILE: MSMg01no441_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:19 2005CHROMAT_FILE: MSMg01no441_i03.g1 PHD_FILE: MSMg01no441_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAGTGAGCGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCATCTCTACCCGGTTTTGATTCCCATATCCTGAGATT
AAAGTCCTTTCTAAGCAGATCTCAACACCTTTTTAAAAATTTTCTGTCTC
ACAGTTCTTGAAGAAAACATGGGGGAGCAGAGAAAATTTCACCCCAAACA
ATTGGCAATTAGTGGCTGCAGGTGTGAGGGCCAGTTTTCTTCATAGATTT
GGCTCCTCAGAGGCTGCCCATGTTCCAGTGGATGTTTTACCCTAACCCCA
CATATGTAGTCAGCACTAAATTCACTCAGTGGTTTTATTAAAATATGCAT
GGAATTAAGGCTAAAAGTGATACAGGAGAAATGGAGAGCAATTCAAGGAG
AAGAAGATGGAGATGGATTTACTCAAACTCATTATGTTTATGTACAAAGT
TCTTCAGCAAAACATTTAAAACTAAGTAAGTAAGTAAATAAGTAAATAAG
TAATAAGCAAGCAATCAAGTAAGTAAAAAATAAATATATGAGTAAATAGA
CAAATATATTTTTATGCAAGCTCACGTGCAATAGGCATGAAAGTGTGTGT
GTGTATGTGTGTGCGTGTGCGCCCCTCTATCCCCTTCCNCCCCCNCTGCT
TCCGCGCTTCNTGTTGTGGCTTCTTTGCCGCGCTCCCTGCTTGTTCCTCT
TTCCCCGCCGCGGTTCCCCCCCCCCT
NNNCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTGCTCATATGAGGCC
TCCAATACACATACAGAAGAGGATGCTGGGAGAACTCTACAAGTCCCCTT
TCCCAACTGGAGGGCATTTCATCTAAGGTCACTCCCTTTGAGTCCTGGGA
GTCTCTCAGCTCCCAGGTCTCTGGTACATTCTAGAGAGTTTTCTCACCTC
CTACCTCACAAAGTTGCCTGTTTCCATTCTTTTTGCTGGTCTTCATTAAT
GCAGTCCTTTTTCATAACCCTCACAGTATTTGATCAAGTTCATCTCTTCC
CCTCCGTGTGTGCTTTCTCACCCAAGTCTCTCCCTCCCCCTTCTTGTAGT
AATTGTTTAACCTTCTTAACATTTCTAATTATTTTTATCATAAAGATAAT
TGAATTTTTTGATTCATTATCTTATAAACTTCCCAATGCACTAGATACAA
TTATCGAAGGTACATTTGTTTGATTTTATTTCACTTCATTTTAGTGTTGA
GGTAGGCACTTAGTATGTTATGTATTCTCTAGGAAGTGATACAGTGTTGC
GGTTCAGCATTCCATGGTGGTGCTAATACAGGCATGTTTAAACATACCTG
GCTTTAATTGTTCTTAGGAAAATAGACCCCAAAAACTCCTATAACCACTA
TAAAATTTCCACAGGCAGCTTCTGAGAGATGCAAATATTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_i03.b1 MSMg01no441_i03.b1 CHROMAT_FILE:
MSMg01no441_i03.b1 PHD_FILE: MSMg01no441_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:19 2005
         (550 letters)



>mm_chrY_2603455_2604406
          Length = 952

 Score =  126 bits (65), Expect = 5e-33
 Identities = 93/107 (86%), Gaps = 10/107 (9%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatctctacccggttttgattcccatatcctgagattaaagtcctttctaagcag 64
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gaattcatctctaactggttttgattcccatatcctgagattaaagtcctttctaagcag 248

                                                          
Query: 65  atctcaacaccttttt------aaaaattttctgtctcacagttctt 105
           | |||||||  |||||      |||  |||||||||||||| |||||
Sbjct: 247 acctcaaca--tttttgtttttaaa--ttttctgtctcacaattctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 952
Length adjustment: 10
Effective length of query: 540
Effective length of database: 942
Effective search space:   508680
Effective search space used:   508680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)