BAC Information

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BAC

Clone NameMSMg01-443D16
ChromosomeY (Build37)
Map Location 139,778 - 140,015
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039202, Zfy1
Downstream geneUbe1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443D16.T7 (MSMg01no443_d16.b1)MSMg01-443D16.TJ (MSMg01no443_d16.g1)
ACCAG532685AG532686
length775857
length of high quality
(start - end)
241 (73 - 313)---
definitionCHROMAT_FILE: MSMg01no443_d16.b1 PHD_FILE: MSMg01no443_d16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:46 2005CHROMAT_FILE: MSMg01no443_d16.g1 PHD_FILE: MSMg01no443_d16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:46 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCG
CGGAATTCTTACACTCTACCTCTTTGAGGAATTATGAGAATTTCTCACAA
TTTTCTGCTTTTCCTGTACAGACACCACCCTTTGTCTGTAAGTTGAACAG
GAGAAGGAACTAGAGGGGGACCGGAGATGGGAACAAGAAATGGTAAACCA
TTCTTTAAATTTTTGATAAATCTAAGAAAAGATCCTAAGAATTGTACTAG
TCGTGATATCAAATACCTCGATTACAAGCACTTGTCGGGGGGTGGGGGAT
TGGGAGTAGGCNNNNNNNNNTTTTGTTCNTTTCCCCGCGCCTTTGCCCNC
TCCCCCCCTCCTTTTTTTTTTTCCCCTCCTTTTTCTCCTCTCCCTTTTCC
ATCCTTCTCCCCTTCCCCCCCTCCCCCTTTGTTCTTCTTTCTTCCTGTCC
TTTCTTCGCTCCCACCCCCTTTTCCTCTCTTTCTCCTCCCCGTACTCCCC
CCTTTTTCTCCGTTTTTTTTCCTCCTTTTTTTCCCTTTTTTTCCTTTTCG
TTTTTCCCCTCTTTTTCCCCTTTTTTCCCATCCCCTCTTCTTCATTTTCC
TAATCCTCCTTATATTTCCCTCACTCCTTTTTTTTTTTTCTTTCTCATCC
CCATTCCCCCGCCCCCCTTTCTCCCCTTCCCCCTCCTTTCTTGCTTTGCG
TTTAAATACCACGCTCATTTCTTTGTGCCCCCCCCCTTTCCACTATATTT
TTATACTCTCTTTCCTCCCTCCCCC
TTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCCCCGTCTTAATCTCTTG
TCTACATTCCTCGTCCTTTAAGCACGATTTCATCAGCTTCCACAACGTCA
TGGTTTCTGCTCTACGTTTGTCATTCTCCACTCCCCTAACTAACTCTCCC
TTGAGTTTTTCCCAATCATGTACAACACCCTGATCACCCTGACCTCTTTC
TCTCTCCGCCTTTCGATCCACCTCTCTCCCCCTTCCCTCCATTCCCCTTA
TCCTCTCCTTTCTTCCAAATTCCTCTCTCTATTTTTCTCCTTTTTCCCCC
CCTTTTTTTTTTTCTCCTCCCCCTCTCTTTCCCTCTTTTTACCACTATCC
CTCCTCTCCTTTCCTTCTTTTTATTTTATCCCCTTTCCTCTATCCCCCCC
TTCTTTCCTTTTTCCCCTATCCCTCTCCCTTCTCCTTTTTTTTCTCTTAC
CCCCCCCTTTTTCTCCTCCAACCNTCTTCTCTCCTTCCCCCATTTTTCCC
CCTCCCCCCCCCCAATTTTATATTCCTCCCCTCCTCCATTTTCCCACACC
ATCCCCTCCCCCCCCTCTTTAATTATCTTTCACTTTCTCCCCCTCTCTTT
TTTTTCATCTTTTCCCCCCTCATTTCCATCCTACCCCTCCTTACATTCCC
TTCCCCTCTCATTTCTTATATCTCCCCACACTATTTTTTCTCACACATCA
TTCCCACTTTTCCTTCTCCTCCTCTTTTTCTCCGCACACTCTTATTATCA
TCCTATTATAATTTCCTCCCCACACTTTTTTTCCCCCCCACTATTTAATC
TATTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_d16.b1 MSMg01no443_d16.b1 CHROMAT_FILE:
MSMg01no443_d16.b1 PHD_FILE: MSMg01no443_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:46 2005
         (241 letters)



>mm_chrY_139578_140218
          Length = 641

 Score =  453 bits (234), Expect = e-132
 Identities = 237/238 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgaggaattatgagaatttctcacaattttctgcttttcctgtacagacaccaccctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgaggaattatgagaatttctcacaattttctgcttttcctgtacagacaccaccctt 260

                                                                       
Query: 61  tgtctgtaagttgaacaggagaaggaactagagggggaccggagatgggaacaagaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtctgtaagttgaacaggagaaggaactagagggggaccggagatgggaacaagaaatg 320

                                                                       
Query: 121 gtaaaccattctttaaatttttgataaatctaagaaaagatcctaagaattgtactagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaaaccattctttaaatttttgataaatctaagaaaagatcctaagaattgtactagtc 380

                                                                     
Query: 181 gtgatatcaaatacctcgattacaagcacttgtcggggggtgggggattgggagtagg 238
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgatagcaaatacctcgattacaagcacttgtcggggggtgggggattgggagtagg 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)