BAC Information

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BAC

Clone NameMSMg01-444I10
ChromosomeY (Build37)
Map Location 2,866,577 - 2,866,725
singlet/doubletsinglet
Overlap genenone
Upstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444I10.T7 (MSMg01no444_i10.b1)MSMg01-444I10.TJ (MSMg01no444_i10.g1)
ACCAG533672AG533673
length787729
length of high quality
(start - end)
149 (78 - 226)235 (81 - 315)
definitionCHROMAT_FILE: MSMg01no444_i10.b1 PHD_FILE: MSMg01no444_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:27 2005CHROMAT_FILE: MSMg01no444_i10.g1 PHD_FILE: MSMg01no444_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGAAATCCGCGGAATTC
CCTGTTTTGACATTATCCTGACAGATATAGCCTAGAACTGGTAAGAAGTA
AGGCTTGGAGAATCACAGGAGTTGCCTTGCCCTGACTTTATAGATGACAG
CAAATAACTGTAAGTATCACCTCGTATTTTAGACTGAGGCAGTGCAATTG
ATGATGGCATGTTCCAATATAATAATAGAAAAACTTACAAACCAAATAAC
AAACAAAAAAAACTATTTTTTCTGCTTCAGATCTTGTCAGGGCCATTCTA
GCCCCATCGTTTTTTTTTTCTCTACACTCCTCAGATAATTGCCCTGACGA
CATCTATCATTGTCATACTTACCATTTACCATTGTGCTTCTAACTTCTCT
CATTGTCCGGTGTTATATTTGTTGCCATTTATGATACCTCCTCATGATCC
TTTTTTTCACGAGCATATTGCTCATTCTCCGTTCTCCGTCCTATCTTACT
CTCTTTCTTACTCCGCTAATCCATGTTTTTTCTTTTTTCCCCCCCTTCTA
TTCTTCTCCTTTTTCCTTTTCTTTCTTTTTCCCTTTCCCCCCCTTGTCCC
ATCCATTAATCGTCTTCCCCTTTTCCCCCCCCCTTCCCCCTTCTCTATTC
TATTCCTTCCCCATCCCTGCCCCCAAACTTTTTTTAACCGTCTTTTTTCC
TCCCTGTCTTGCCTTCTCCTCACTTTTTCCCTTTTTTTACTCACATTTCT
CCTGTCCCCTTTCCTCGCCATTTCTCGTCTCCATCCC
NATTCTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TACAAATCAAAACAACCCTAAGATTCCACCGCACACCAGTCAGAATGTCT
AGGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCT
GGAAATCCTTCTGGCGGTTCTTTTTTTTTTGGACTTAGTACTACCGGATG
ATTCAGGAATACCTTCTCCTGGGCATATTATCCAGAAGAAGGCCCCATTG
GGGTAAAAAAGACACCATGCTTCCACTTATGGTTCTTAGCCCGTATTATT
TTTATATTATCCCCTAAACTTGGGAAAGAAAACCCAAAAGGGCCCCCTTC
TCCCGATAGGATAGGGGATCCTTACATAAAGGGGGGATAACTCTGCATAG
TTGGGGGTTACCCTATCCGCCTTTTTTATACATACAAGTATTTTTTTTAA
AAACTCCCCGCCCACATCAGGGTTTGTCATCCTTCTCGGGTGCTCCCACC
CCCGATATGGCCGCACATCACCCTTTCTCTTTTTACACTATCCCCTTTCC
TATTTAAGCCCTCCCATAAGCTTATATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_i10.b1 MSMg01no444_i10.b1 CHROMAT_FILE:
MSMg01no444_i10.b1 PHD_FILE: MSMg01no444_i10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:27 2005
         (149 letters)



>mm_chrY_2866377_2866925
          Length = 549

 Score =  190 bits (98), Expect = 4e-53
 Identities = 137/150 (91%), Gaps = 2/150 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagcctagaactggtaagaagtaaggcttggagaatcacaggagttgccttgccctgact 60
           ||||| ||| ||||||| ||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 tagcccagatctggtaaaaagcaaggcttggagaatcacaggagttgccttgcccagact 260

                                                                       
Query: 61  ttatagatgacagcaaataactgtaagtatcacctcgtatttt-agactgaggcagtgca 119
           ||| ||||| ||||||||||||||||||||||||| || |||| ||||||||| ||| ||
Sbjct: 261 ttagagatggcagcaaataactgtaagtatcacct-gtttttttagactgaggaagtaca 319

                                         
Query: 120 attgatgatggcatgttccaatataataat 149
           |||||||||| |||||||||||||||||||
Sbjct: 320 attgatgatgacatgttccaatataataat 349


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 549
Length adjustment: 8
Effective length of query: 141
Effective length of database: 541
Effective search space:    76281
Effective search space used:    76281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)