BAC Information

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BAC

Clone NameMSMg01-448I06
ChromosomeY (Build37)
Map Location 1,311,451 - 1,311,807
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448I06.T7 (MSMg01no448_i06.b1)MSMg01-448I06.TJ (MSMg01no448_i06.g1)
ACCAG536711AG536712
length778741
length of high quality
(start - end)
337 (43 - 379)447 (77 - 523)
definitionCHROMAT_FILE: MSMg01no448_i06.b1 PHD_FILE: MSMg01no448_i06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:49 2005CHROMAT_FILE: MSMg01no448_i06.g1 PHD_FILE: MSMg01no448_i06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGATCCGCGGAAT
TCCAAGCCCAGTTCCCACTCAAGGACTACCTAGAATATTGGTGAAGGACA
GGGAATAAAGTTGGATATTGCTTAGGTATTTGACAAGTCATTACTTGGAG
GCACTTATAATAAAACAACATTGAAAGAAGTCACAAAGATTCAATCACTT
ACTAATGTAAGGACAAGTTTGATGCATTTTTTCCAGGATGGTATGTTCCT
GAAGACTTAGTTTCCATGAACTTTTTGATTAGGGACTGTGTCTAAATATT
TAGGACTGTCACGGGAGTCACTACTGGGGTTTGTGTTCCAATGGCTGGTG
TGCGCTTGTGTGTGTGTGTGTGGGTGTGTGAGTGCTCGTGTGTTTCTCTT
TTTTTTTTCCCGTCTTCTTTGTTGTGTTTTCCTCTCGTTCGCTTTTGGGC
GTGTCCCGATTTGCCCTTTTGCCCCCGGTCATTTCTTTTGACTTCCGCAT
CTCGGCTTCTGCGAACCTTCGCATCGCCTTTTGTCCACTTTCGCCCTTCG
TGTTTTCTCGCCTTTTTCCCTGCTTTTTCTCTTTTGCCCTTACGGGTTAC
CCCCCTTTTTCGTTTATCCCCACTTTATATCAATTTGGCTGTCCGGGCGG
TGGTGTTTTCTCGCTAACCCTTATGTTTTGGTGGCCATCCGCGTTTTTTT
CCCCTTTTTTCCGCCCTTTTGTTATTTCCACTCACCGGAACAGTGCCGGC
CATTTTTTGTTTTTCTTTTACGCCGCAC
NNNCCCGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCAAGAAGAATTCCATCAAAAAAATTGTAAGAAGT
TCTCAAGGAATTAATTAATGTAGTTCTTAATATACAATGTCTTTACTGAA
CATATACAGACCACTTATATTTCAATCTCCTAAATAGCAACTCATTTTAT
AGCACTTACATTACATTAAGTGCAAAAGTAATCCAGAGATTATTTAAAAT
ATATAAGGATCAGGGGATATGGCCCAGAGACAATGCCATGTGTGTGTTCA
AACATTCACCTACAACATTAGTGCTTATGATTTTGGGAGGGGCAGAGACA
GGAAGATGACTGTGTCTTCCTGAAAGCCAGCTCAGCAAGAAACCCAGTCA
CAAGGGGATAAGTTATGGAGGAAAAGAGTAGATCACACTATACCCTTCCC
TAGCCTCTGAACTTACCTGTACAGTTCTCTATGCAGACTCACATAAATAT
GATTAAAATATGCTAGAGGTTATTTTTGCATAGCTTATATTCATAAGCCA
TGTTGTTTTAGACTAGAAACCCGAGGACTTTATATCCTTATTAGCCTTGG
AGCAAATTCCTCAGACATTGATGACGGGTATATCTTCCTATCGTGCCTAT
CTTTTTTCTTTTATTGGCGTGTTGCCTCGTATTCCTATATGCTTCTCACC
TCTAATTTCCCGTTATTTTCCAATACGCGCTTCTCAAGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_i06.g1 MSMg01no448_i06.g1 CHROMAT_FILE:
MSMg01no448_i06.g1 PHD_FILE: MSMg01no448_i06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:49 2005
         (447 letters)



>mm_chrY_1310965_1311811
          Length = 847

 Score =  253 bits (131), Expect = 1e-71
 Identities = 299/367 (81%), Gaps = 28/367 (7%)
 Strand = Plus / Minus

                                                                       
Query: 99  atctcctaaatagcaactcattttatagcacttacattacattaagtgcaaaagtaatcc 158
           |||||||||||| |||||| || ||||||| || |||| ||||||| |||||||||||||
Sbjct: 843 atctcctaaataacaactccttgtatagcagtttcattgcattaagggcaaaagtaatcc 784

                                                                       
Query: 159 agagattatttaaaatatataaggatcaggggatatggcccagag--acaatgccatgtg 216
           |||||| |||||||||| | || || | | ||| ||||||||| |  |    |||| |||
Sbjct: 783 agagatcatttaaaataaagaaagacctgtggagatggcccaggggta----gccaagtg 728

                                                                       
Query: 217 tgtgttcaaacattcacctacaacattagtgcttatgattttgggaggggcagagacagg 276
            ||| ||  ||||||||||||||||  |||||||| ||  | ||||||||||||||||||
Sbjct: 727 agtgatcccacattcacctacaacaacagtgcttagga--tggggaggggcagagacagg 670

                                                                       
Query: 277 aagatgactgtgtcttcctgaaagcc------------agctcagcaagaaacccagtca 324
           |||||||||||| |||||||||||||            |||||||||||| |||  ||||
Sbjct: 669 aagatgactgtggcttcctgaaagccagccccactcctagctcagcaagagacctggtca 610

                                                                       
Query: 325 caagggga-taagttatggag-gaaaagagtagatcacactatacccttccctagcctct 382
           ||| |||| ||| ||| |||| | || ||| ||| ||||| |||||||||||||||||||
Sbjct: 609 caa-gggagtaaattagggagtg-aaggagcagagcacacaatacccttccctagcctct 552

                                                                       
Query: 383 gaacttacctgtacagttctctatgcagactcacataaatatgattaaa--atatgctag 440
           |||||||||||||||| ||| |||||| || ||||||||||||||||||  ||||   ||
Sbjct: 551 gaacttacctgtacaggtctgtatgcatacacacataaatatgattaaagtatata--ag 494

                  
Query: 441 aggttat 447
           |||||||
Sbjct: 493 aggttat 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)