BAC Information

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BAC

Clone NameMSMg01-450P22
ChromosomeY (Build37)
Map Location 1,311,419 - 1,311,883
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450P22.T7 (MSMg01no450_p22.b1)MSMg01-450P22.TJ (MSMg01no450_p22.g1)
ACCAG538589AG538590
length808771
length of high quality
(start - end)		487 (33 - 519)490 (80 - 569)
definitionCHROMAT_FILE: MSMg01no450_p22.b1 PHD_FILE: MSMg01no450_p22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:05 2005CHROMAT_FILE: MSMg01no450_p22.g1 PHD_FILE: MSMg01no450_p22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:06 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAA
TTCAAAAGGGATTTCTTAAAATAAAATAAAACAATAACAAAAAGCAATCT
GACTTTCTCCAGCCCCTCTATGGTCCAGTAGCCTCCATGGCTTTTTAACA
CCAACAAACCACTCGTAAACACTACTGTTGGGCAGATTTGTGTGTTGCTA
TAAAGCTGCCTTGATCATTTGCTTTCTTGGGTGTTATCCTTCATGAAGTT
ATTTCTCTCTTTTCCTTCTCTGTAAAATATATAAGACTAAACTTAAAAGC
ATTTTCTGAAGTGATACATGAGTCCCAACCTCTCTATATAAGATCTGTTT
ACCATGAGTCAGCCAAAATAAACTCTGCCTGACATTCTTAGGTTGGATTC
TGAAAGAGGTGGTTTCTGTTGTCACTGGGGTGTCACTTATTTCCCCATTC
ACTAGCAGCACCTAGAACATGGCACTAGGGTACAAAGGCCAGTGGAAGTC
CTCCTCTCTCAACTCATGGATGTATTTTCATAAAAAAGATATTAATCCCA
GCATCTATTTCCACCTCTAGAGAACATGATTGCCAGGCTAGGCTTCCATT
CCTCAACAAAATTCCTCATCCCCCTAAACGGAGAAAAACTAATTTTCCAC
GACCAAGCCCATTTTACCCTAAATCTTTCCTTAATCCCGCCCCACCAATA
ATAAACAGCGGGAAAAAACACCACCCGGAGGGGATTTACCCTCCAAAAAA
AAACGAAAGGAACCCTTTCACCAAATCCCACAAAAATGTTTTTCCCCTCC
TAAAAAAA

NCCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCAAAAAAATTGTATGAAG
TTCTCAAGGAATTAATTAATGTAGTTCTTAATATACAATGTCTGTACTGA
ACATATACAGACCACTTATATTTCAATCTCCTAAATAGCAACTCATTTTA
TAGCACTTACATTACATTAAGTGCAAAAGTAATCCAGAGATTATTTAAAA
TAAAGAAGGATCAGGGGATATGGCCCAGAGACAATGCCAGGAGTGTGTTC
AAACATTCACCTACAACACCAGTGCTTAATATTTTGGGAGGGGCAGAGAC
AGGAAGATGATTGTGGCTTCCTGAAAGCCAGGCTCACTACCAGCTCAGCA
AGAAACCCAGTCACAAGGGGATAAGTTATGGAGGAAAAGAGTAGACCACA
CTATACCCTTCCCTAGCCTCTGAACTTACCTGTACAGTTCTCTATGCAGA
CTCACATAAATATGATTAAAATATGCAAGAGGTTATTTTGCATAGCTTAT
GTTCAAAAGCAGTGTTGTTTTAGACTAGAAACCTGAGGACTTTATATCAT
TATAGTTCCTGGAGCAAACTCCCAAGATATAGATGATGGGTATATCTTCT
TACTGTGCAAAGGAAACCTCAGTTAAGTGTGTGTGTCAGGGACTCCAAAC
AGCTTTTCCTCTTCTATGGTCCCTTTATATAGCATAGAATGATCTGCAAA
TAATGAAAATATGTAAACAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_p22.g1 MSMg01no450_p22.g1 CHROMAT_FILE:
MSMg01no450_p22.g1 PHD_FILE: MSMg01no450_p22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:06 2005
         (490 letters)



>mm_chrY_1310996_1311883
          Length = 888

 Score =  395 bits (204), Expect = e-114
 Identities = 406/482 (84%), Gaps = 30/482 (6%)
 Strand = Plus / Minus

                                                                       
Query: 21  gttctcaaggaattaattaatgtagttcttaatata-ca-atgtctgtactgaacatata 78
           ||||||||||||||||| || || |||||| ||||| || |  |||||||||||||||||
Sbjct: 888 gttctcaaggaattaataaaagtggttctttatataccaca--tctgtactgaacatata 831

                                                                       
Query: 79  cagaccacttatatttcaatctcctaaatagcaactcattttatagcacttacattacat 138
           ||||||||||||||| | |||||||||||| |||||| || ||||||| || |||| |||
Sbjct: 830 cagaccacttatattgccatctcctaaataacaactccttgtatagcagtttcattgcat 771

                                                                       
Query: 139 taagtgcaaaagtaatccagagattatttaaaataaagaaggatcaggggatatggccca 198
           |||| ||||||||||||||||||| ||||||||||||||| || | | ||| ||||||||
Sbjct: 770 taagggcaaaagtaatccagagatcatttaaaataaagaaagacctgtggagatggccca 711

                                                                       
Query: 199 gag--acaatgccaggagtgtgt--tcaaacattcacctacaacaccagtgctta--ata 252
           | |  |    ||||  |||| ||  ||  |||||||||||||||| |||||||||  || 
Sbjct: 710 ggggta----gcca--agtgagtgatcccacattcacctacaacaacagtgcttaggatg 657

                                                                       
Query: 253 ttttgggaggggcagagacaggaagatgattgtggcttcctgaaagccaggctcactacc 312
               ||||||||||||||||||||||||| |||||||||||||||||||| | |||| ||
Sbjct: 656 ----gggaggggcagagacaggaagatgactgtggcttcctgaaagccagccccact-cc 602

                                                                       
Query: 313 -agctcagcaagaaacccagtcacaagggga-taagttatggag-gaaaagagtagacca 369
            |||||||||||| |||  |||||||||| | ||| ||| |||| |||  ||| ||| ||
Sbjct: 601 tagctcagcaagagacctggtcacaaggg-agtaaattagggagtgaag-gagcagagca 544

                                                                       
Query: 370 cactatacccttccctagcctctgaacttacctgtacagttctctatgcagactcacata 429
           ||| ||||||||||||||||||||||||||||||||||| ||| |||||| || ||||||
Sbjct: 543 cacaatacccttccctagcctctgaacttacctgtacaggtctgtatgcatacacacata 484

                                                                       
Query: 430 aatatgattaaa--atatgcaagaggttattttgcatagcttatgttcaaaagcagtgtt 487
           ||||||||||||  ||||  |||||||||| |||||||| |||| | |||||||| ||||
Sbjct: 483 aatatgattaaagtatat--aagaggttatgttgcatagattatatgcaaaagcaatgtt 426

             
Query: 488 gt 489
           ||
Sbjct: 425 gt 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 888
Length adjustment: 10
Effective length of query: 480
Effective length of database: 878
Effective search space:   421440
Effective search space used:   421440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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