BAC Information

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BAC

Clone NameMSMg01-452G24
ChromosomeY (Build37)
Map Location 1,311,321 - 1,311,782
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452G24.T7 (MSMg01no452_g24.b1)MSMg01-452G24.TJ (MSMg01no452_g24.g1)
ACCAG539689AG539690
length778771
length of high quality
(start - end)		593 (46 - 638)574 (75 - 648)
definitionCHROMAT_FILE: MSMg01no452_g24.b1 PHD_FILE: MSMg01no452_g24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:59 2005CHROMAT_FILE: MSMg01no452_g24.g1 PHD_FILE: MSMg01no452_g24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGACCTTTCCTGGACTTTTATTATGAATGGGTGTTGTGTTTTGT
CAAATGCTTTCTCAGCATCTAATGAGGTGATCATGTTGTTTTCGTCTTTG
AGTTTGTTTCTATAGTGGATTAAGTTGACAAATTTCCATATATTAAACCA
TCCCTGCATTACAGGGATGAAGTCTACTTGACCATGATGGATGATCGTTT
TGATGTATTCTTTTATTTGGTTTGCAGTGATTTTATTGAGTATTTTTGCT
TCGAAATTCATAAGGGAAAATGGTCTGAAGTTTCCTTTCTTCATTGTGTT
TTTGTATGGTTTGAATATAATTGTAATCTGGCTTCATAGAACAAATTCAA
TAGTGTTCCTTCTCTTTTGATTTTGCATATTAGTTTGAAGAGTTTTGGTA
TTAGGTCTCCATGTGTAAGACCCCGAAGATGGACCTCCTCTCAAGTCCAG
TAAAGTCCCGGGATGAGCTGGCCAGCACCCCAATGACTTGAGAGAAATCC
ACACCTGATGCAAACTGCAAGAGGTTTTATTATCAGCTAGCTAAGGACAA
ACTCCTTCCACTGTGCAGGGCAGGGGCGTATGACTCTGAGATGTGACAGA
AGAAAGTTTTTATTATCTAGCTGAGGATTGGGATGAGTTGGGAGAGAGTT
TGGAGAAGATTTNAAAAAATATTTTATTTTATTTATTTTTTATTATTGTT
TTTTGAAATTATATGATTTTTTTTTTAG

NCAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATCAAAAAAATTGTATGAAGTTCTC
AAGGAATTAATTAATGTAGTTCTTAATATACAATGTCTTTACTGAACATA
TACAGACCACTTATATTTCAATCTCCTAAATAGCAACTCATTTTGTAGCA
CTTACATTACATTAAGTGCAAAAGTAATCCAGAGATTATTTAAAATAAAG
AAGGATCAGGGGATATGGCCCAGAGACAATGCCATGTGTGTGTTCAAACA
TTCACCTACAACACCAGTGCTTATGATTTTGGGAGGGGCAGCGATAGGAA
GATGACTGTGGCTTCCTGAAAGCCAGCTCAGCAAGAAACCCAGTCACAAG
GGGATAAGTTATGTAGGAAAAGAGTAGATCACACTATACCCTTCCCTAGC
CTCTGAACTTACCTGTACAGTTCTCTATGCAGACTCACATAAATATGATT
AAAATATGCAAGAGGTTATTTTGCATAGCTTATATTCAAAAGCAATGTTG
TTTTAGACTAGAAACCTGAGGACTTTATATCATTATAGTTCCTGGAGCAA
ACTCCCAAGATATAGATGATGGGTATATCTTCTTACTGTGCAAAGGAAAC
CTCAGTTAAGTGTGTGTGTCAGTGACTCCAAACAGCTTTCCTCCTCTATG
TTCCTTTATATAGCATAGAATGATCTGTAAATAATGGAAATATGAAAACA
AAGCTTTTTTGAGATTTTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_g24.g1 MSMg01no452_g24.g1 CHROMAT_FILE:
MSMg01no452_g24.g1 PHD_FILE: MSMg01no452_g24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:59 2005
         (574 letters)



>mm_chrY_1310821_1311795
          Length = 975

 Score =  383 bits (198), Expect = e-110
 Identities = 396/476 (83%), Gaps = 37/476 (7%)
 Strand = Plus / Minus

                                                                       
Query: 122 tagcacttacattacattaagtgcaaaagtaatccagagattatttaaaataaagaagga 181
           ||||| || |||| ||||||| ||||||||||||||||||| ||||||||||||||| ||
Sbjct: 962 tagcagtttcattgcattaagggcaaaagtaatccagagatcatttaaaataaagaaaga 903

                                                                       
Query: 182 tcaggggatatggcccagag--acaatgccatgtgtgtgttcaaacattcacctacaaca 239
            | | ||| ||||||||| |  |    |||| ||| ||| ||  ||||||||||||||||
Sbjct: 902 cctgtggagatggcccaggggta----gccaagtgagtgatcccacattcacctacaaca 847

                                                                       
Query: 240 ccagtgcttatgattttgggaggggcagcgataggaagatgactgtggcttcctgaaagc 299
            ||||||||| ||  | ||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 846 acagtgcttagga--tggggaggggcagagacaggaagatgactgtggcttcctgaaagc 789

                                                                       
Query: 300 c------------agctcagcaagaaacccagtcacaagggga-taagttatgtagga-- 344
           |            |||||||||||| |||  ||||||| |||| ||| ||| |  |||  
Sbjct: 788 cagccccactcctagctcagcaagagacctggtcacaa-gggagtaaatta-g--ggagt 733

                                                                       
Query: 345 -aaagagtagatcacactatacccttccctagcctctgaacttacctgtacagttctcta 403
            || ||| ||| ||||| ||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 732 gaaggagcagagcacacaatacccttccctagcctctgaacttacctgtacaggtctgta 673

                                                                       
Query: 404 tgcagactcacataaatatgattaaa--atatgcaagaggttattttgcatagcttatat 461
           |||| || ||||||||||||||||||  ||||  |||||||||| |||||||| ||||||
Sbjct: 672 tgcatacacacataaatatgattaaagtatat--aagaggttatgttgcatagattatat 615

                                                                       
Query: 462 tcaaaagcaatgttgttttagactagaaacctgaggacttt-atatcattat-agttcct 519
            ||||||||||||||| |||| ||||  ||||||||||||| |||||||||  ||| |||
Sbjct: 614 gcaaaagcaatgttgtcttagcctagggacctgaggacttttatatcattaggagt-cct 556

                                                                   
Query: 520 ggagcaaactcccaagatatagatga-tgggtatatcttcttactgtgcaaaggaa 574
           ||||||||||||| ||||||||| || |||||||| ||||||||||||||||||||
Sbjct: 555 ggagcaaactccccagatataga-gaatgggtataccttcttactgtgcaaaggaa 501


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 975
Length adjustment: 10
Effective length of query: 564
Effective length of database: 965
Effective search space:   544260
Effective search space used:   544260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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