BAC Information

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BAC

Clone NameMSMg01-453C08
ChromosomeY (Build37)
Map Location 1,655,339 - 1,657,383
singlet/doubletdoublet
Overlap genenone
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143
Downstream geneLOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453C08.T7 (MSMg01no453_c08.b1)MSMg01-453C08.TJ (MSMg01no453_c08.g1)
ACCAG540230AG540231
length750746
length of high quality
(start - end)
701 (50 - 750)641 (81 - 721)
definitionCHROMAT_FILE: MSMg01no453_c08.b1 PHD_FILE: MSMg01no453_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:55 2005CHROMAT_FILE: MSMg01no453_c08.g1 PHD_FILE: MSMg01no453_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:55 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(1,655,339 - 1,656,026)(1,656,875 - 1,657,383)
sequence
NNTTTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGGAT
CCGCGGAATTCTCTGCTGATCTGCACAGGAAAGCACAGAAATCTAGGACT
ATACAGAAATATCAAGTTCCAGAGAAGAAAAACAAAAGAAACAGGGAGGA
ATTGGGAAGTACAAATAAGAATTTGAATGTACAGATTGTAAATCCTGTCT
CTGGGAATAATAATCAAGATACTTTGAAAGGAACAATCAAGCCATGTTTA
AAAGACTGGACACACCATTTGGCATATGTTATATAAATCAGTAGAAATAA
TTAAAAATGTCTCATTAAAATTCACAACAGTCCCCTTAAGTTTTTTCTTC
TGGTTTTCTTCTTTAAATATCTTATTGAATCTGAAGTGATGGCTCAGCAT
TTCTGAACACTGGCAGCTCATGCACAGCATACACTTGGACTTGCCACATT
TCCATAGGCTGTTTACAACTTCTTCTATTTTAGTAACCACAGGGAATCCA
CACTCCCCCTTCCCATGAGACAATGTATCCATACCTATACAGAGAATTCA
AAACAAACAAAATCTCTTCAATCTGTCTCACCAATCATACATTAGGTCCA
ATGCTTGGGTGCTTTCTGTTTCAGGCTCACAATGATCAATGGTATATACT
TTCTAGGTTGTATAACTGCACTTCATTTCTCTACCAGGAACCTTTCCTCA
GATTCTGTCCTCATCAAGAATCCCATCTAATACCATCAGACACTTCTATG

NAACACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGACCAAGAGTAAGCTAATA
CACTATATAAAGCTGTACTGAGAAGCATTAAGAAGGCAGGTATCTCACTC
TGAACAGGGCTAAGGTTGTTTCGACTGTATTGGCTTTATTCTTCTGGAGA
TTCTTGTCAGGAATTGCGAGCATTTACCAGACCACAACAGGAAACCTTCC
ATATGTCTCCTTTGGTGTCTGGGCATAGGATATGTGAGATGCATCAAGAC
TGATTAAAGGTCATGTTCCCTAGATGTGAATCTGTTTCCAGGAATACGAT
GATATACAAAAGGTCAGCTCCAGAATACATAGCATCAGGTCTTTCTTGGC
CAATTAAAATTGGAGCCAAAATCTCAAGAGACAATGTATGTATTGGACAG
ACTTGCTGCTATCACACAGGTCGTGGCTTCAATTTCCAGCAATTACATTG
TGACTGTTTCTCTGTCTCTCTATCTGTCTCTCTGTCTCTCTGTCTCTCTG
CCTCTCTCTCTTTCCTTCTAACTTTCCCACTCTCTGTATTGCTATCTCTC
TGTATCTCAGTCTCAGTTTGTGTTTCTCTCTTCCCTCTCACTCCCTGCCC
CCCCTTTCTTTCTCATCCTCCCTGTAATTCCAGCAGCATATGCTGCTGTA
TCCTCTTCTGTCCTCTGATGTATTACATATATGAAGTGTCCATGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_c08.b1 MSMg01no453_c08.b1 CHROMAT_FILE:
MSMg01no453_c08.b1 PHD_FILE: MSMg01no453_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:55 2005
         (701 letters)



>mm_chrY_1655133_1656228
          Length = 1096

 Score =  514 bits (266), Expect = e-150
 Identities = 596/710 (83%), Gaps = 37/710 (5%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctctgctgatctgcacaggaaagcacag-aaatctaggactatacagaaatat-c 64
           |||||||||||||| ||||||||||| ||| || ||| |||||||||| |||||| || |
Sbjct: 207 gaattctctgctgaactgcacaggaaggcatagaaaaactaggactatccagaaaaatgc 266

                                                                       
Query: 65  aagttccagagaagaaaaaca-aaagaaacagg-gaggaattgggaag-tacaaataaga 121
            ||| ||||| |||||||||| ||| ||| ||| |||||||||| |||  | ||||||| 
Sbjct: 267 -agtcccagaaaagaaaaacagaaa-aaa-aggagaggaattggtaagcaaaaaataag- 322

                                                                       
Query: 122 atttgaatgtacagattgtaaatcctgtctctgggaataataatcaagata-ctttgaaa 180
              ||||||| | |||||||||||||||||||| ||||||||||||||| | |||| |||
Sbjct: 323 ---tgaatgt-ctgattgtaaatcctgtctctgagaataataatcaagacaccttt-aaa 377

                                                                       
Query: 181 ggaacaatcaagccatgtttaaaag-actggacacaccatttggcatatgttatataaat 239
           |||||||| || |||||  |||||| ||| ||||||| || ||||| |||||||||||||
Sbjct: 378 ggaacaatgaaaccatgagtaaaagaactagacacacaatatggcaaatgttatataaat 437

                                                                       
Query: 240 cagtagaaataattaaaaatgtctcattaaaattcacaacagtccccttaagttttttct 299
           ||||||||| |||||||||||| ||||||||| | | || | |||||||| ||||| |||
Sbjct: 438 cagtagaaacaattaaaaatgtgtcattaaaaatgaaaatattccccttatgttttctct 497

                                                                       
Query: 300 tctggtttt-cttctttaaatatcttattgaatctgaagtgatggctcag-catttctga 357
           | ||||||| ||| ||||||| |||||||||||||| || ||| | |||| | |||||| 
Sbjct: 498 tgtggttttcctt-tttaaatgtcttattgaatctggagggattgatcagac-tttctgg 555

                                                                       
Query: 358 acactggcagctcatgcacagcatacacttggacttgccacat-ttccataggctgttta 416
           |||| | |||| ||| ||||||||||||||||||||||||| | |||||| |||| ||||
Sbjct: 556 acaccgccagcacatacacagcatacacttggacttgccac-tcttccattggctcttta 614

                                                                       
Query: 417 caacttcttctattttagtaaccacagggaat-ccacactcccccttcccatgagacaat 475
           ||||| | |||| || ||| ||||||||| || |||||||||| ||||||||| ||||||
Sbjct: 615 caactccgtctacttcagtgaccacaggg-atgccacactccctcttcccatgggacaat 673

                                                                       
Query: 476 gtatccatacctatacagagaattcaaaacaaacaaaatctcttcaatctgtctcaccaa 535
           |||| |||||||||||||||||||||||||||||||||| |||||||  ||||||| |||
Sbjct: 674 gtattcatacctatacagagaattcaaaacaaacaaaatgtcttcaaagtgtctcagcaa 733

                                                                       
Query: 536 tcatacattaggtccaatg-cttgggtgctttctgtttcaggctcacaatgatcaatggt 594
           | || |||||||||||||| ||  | |||| || | |||||||||||   ||| ||||||
Sbjct: 734 ttatgcattaggtccaatgtctcag-tgctctcagcttcaggctcac---gattaatggt 789

                                                                       
Query: 595 atatacttt-ctaggttgtataactgcacttca-tttctctaccaggaacctttcctcag 652
            |||| ||| |||  ||||||||||||||| || ||| |||||| |||| ||| ||||||
Sbjct: 790 ttata-tttgctaccttgtataactgcactacagttt-tctacctggaaacttgcctcag 847

                                                             
Query: 653 attctgtcctcatcaagaatcccat-ctaataccatcagacacttctatg 701
           || ||||||||| |||| |||  || | || ||||||||| | |||||||
Sbjct: 848 atcctgtcctcagcaaggatc--atgc-aacaccatcagaaaattctatg 894


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1096
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1086
Effective search space:   750426
Effective search space used:   750426
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no453_c08.g1 MSMg01no453_c08.g1 CHROMAT_FILE:
MSMg01no453_c08.g1 PHD_FILE: MSMg01no453_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:55 2005
         (641 letters)



>mm_chrY_1656854_1657895
          Length = 1042

 Score =  290 bits (150), Expect = 2e-82
 Identities = 434/548 (79%), Gaps = 59/548 (10%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaccaagagtaagctaatacactatataaagc-tgtactgagaagcattaagaaggcag 59
           |||||| || |||||||| |||||| ||||||| | |||||||||||||||||| |||||
Sbjct: 530 tgaccaggactaagctaacacactacataaagcat-tactgagaagcattaagatggcag 472

                                                                       
Query: 60  gtatctcactctgaacagggctaaggttgtttc-gactgtattggctttattcttctgga 118
           ||| | |||||||| ||| |||||||||||||| | ||||||||||||||| |||| || 
Sbjct: 471 gtaccacactctgaccagcgctaaggttgtttcag-ctgtattggctttatccttcaggg 413

                                                                       
Query: 119 gattcttgtcaggaattgcgagcat---t--taccaga-ccacaacaggaaaccttccat 172
           ||||| ||||| ||| ||   | ||   |  || |||| |||||||||||||||||||||
Sbjct: 412 gattc-tgtca-gaaatg---g-atacctgatatcagatccacaacaggaaaccttccat 359

                                                                       
Query: 173 atgtctc-ctttggtgtctgggcataggatatgtgagatgcatcaagactgattaaaggt 231
           ||||||| |||| | ||||||||||||||||| |||||||||||| || ||||||||  |
Sbjct: 358 atgtctctcttt-gagtctgggcataggatatatgagatgcatcaggaatgattaaactt 300

                                                                       
Query: 232 catgttccctagatgtgaatc--tgtttccaggaatacgatgatatacaaaaggtcagct 289
           |||||||||||||| |||| |  | ||| |||| || | ||||||| || ||||||||||
Sbjct: 299 catgttccctagatatgaaaccat-ttt-cagggatcctatgatatccacaaggtcagct 242

                                                                       
Query: 290 ccagaatacatagcatcaggtctttcttggccaatt--aaaattggagccaaaatctcaa 347
           ||| | ||| ||| |||| |||||||||||||||||  |||||| || |||| |||| ||
Sbjct: 241 ccatactacgtagaatcatgtctttcttggccaattcaaaaatt-gacccaacatcttaa 183

                                                                       
Query: 348 gagacaatg--tatgtattggaca---gacttgctgctatcacacaggtcgtggcttcaa 402
              | ||||  | | ||||   ||   || |||||||||||||| |||| ||||||||||
Sbjct: 182 ---aaaatgactttctatt---caatggaattgctgctatcacaaaggtagtggcttcaa 129

                                                                       
Query: 403 tttccagcaattacattgtgactgt-t-tctctgtctctctatctgtctctctgtctctc 460
            | | ||||| |||||| || || | | ||||||||||| | ||||| | ||| | ||||
Sbjct: 128 gtgcaagcaaatacatt-tggctatatctctctgtctctttgtctgtttttct-t-tctc 72

                                                                       
Query: 461 tgtctctctgcctctctctctttccttctaactttcccactctctgtattgctatctctc 520
           |||||||||      || ||||||  ||          |||||||||||  |||| ||||
Sbjct: 71  tgtctctct------ctatctttc--tc----------actctctgtatcactatatctc 30

                   
Query: 521 tgtatctc 528
           ||||||||
Sbjct: 29  tgtatctc 22


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1042
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1032
Effective search space:   651192
Effective search space used:   651192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)