Query= MSMg01no453_c08.b1 MSMg01no453_c08.b1 CHROMAT_FILE:
MSMg01no453_c08.b1 PHD_FILE: MSMg01no453_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:55 2005
(701 letters)
>mm_chrY_1655133_1656228
Length = 1096
Score = 514 bits (266), Expect = e-150
Identities = 596/710 (83%), Gaps = 37/710 (5%)
Strand = Plus / Plus
Query: 7 gaattctctgctgatctgcacaggaaagcacag-aaatctaggactatacagaaatat-c 64
|||||||||||||| ||||||||||| ||| || ||| |||||||||| |||||| || |
Sbjct: 207 gaattctctgctgaactgcacaggaaggcatagaaaaactaggactatccagaaaaatgc 266
Query: 65 aagttccagagaagaaaaaca-aaagaaacagg-gaggaattgggaag-tacaaataaga 121
||| ||||| |||||||||| ||| ||| ||| |||||||||| ||| | |||||||
Sbjct: 267 -agtcccagaaaagaaaaacagaaa-aaa-aggagaggaattggtaagcaaaaaataag- 322
Query: 122 atttgaatgtacagattgtaaatcctgtctctgggaataataatcaagata-ctttgaaa 180
||||||| | |||||||||||||||||||| ||||||||||||||| | |||| |||
Sbjct: 323 ---tgaatgt-ctgattgtaaatcctgtctctgagaataataatcaagacaccttt-aaa 377
Query: 181 ggaacaatcaagccatgtttaaaag-actggacacaccatttggcatatgttatataaat 239
|||||||| || ||||| |||||| ||| ||||||| || ||||| |||||||||||||
Sbjct: 378 ggaacaatgaaaccatgagtaaaagaactagacacacaatatggcaaatgttatataaat 437
Query: 240 cagtagaaataattaaaaatgtctcattaaaattcacaacagtccccttaagttttttct 299
||||||||| |||||||||||| ||||||||| | | || | |||||||| ||||| |||
Sbjct: 438 cagtagaaacaattaaaaatgtgtcattaaaaatgaaaatattccccttatgttttctct 497
Query: 300 tctggtttt-cttctttaaatatcttattgaatctgaagtgatggctcag-catttctga 357
| ||||||| ||| ||||||| |||||||||||||| || ||| | |||| | ||||||
Sbjct: 498 tgtggttttcctt-tttaaatgtcttattgaatctggagggattgatcagac-tttctgg 555
Query: 358 acactggcagctcatgcacagcatacacttggacttgccacat-ttccataggctgttta 416
|||| | |||| ||| ||||||||||||||||||||||||| | |||||| |||| ||||
Sbjct: 556 acaccgccagcacatacacagcatacacttggacttgccac-tcttccattggctcttta 614
Query: 417 caacttcttctattttagtaaccacagggaat-ccacactcccccttcccatgagacaat 475
||||| | |||| || ||| ||||||||| || |||||||||| ||||||||| ||||||
Sbjct: 615 caactccgtctacttcagtgaccacaggg-atgccacactccctcttcccatgggacaat 673
Query: 476 gtatccatacctatacagagaattcaaaacaaacaaaatctcttcaatctgtctcaccaa 535
|||| |||||||||||||||||||||||||||||||||| ||||||| ||||||| |||
Sbjct: 674 gtattcatacctatacagagaattcaaaacaaacaaaatgtcttcaaagtgtctcagcaa 733
Query: 536 tcatacattaggtccaatg-cttgggtgctttctgtttcaggctcacaatgatcaatggt 594
| || |||||||||||||| || | |||| || | ||||||||||| ||| ||||||
Sbjct: 734 ttatgcattaggtccaatgtctcag-tgctctcagcttcaggctcac---gattaatggt 789
Query: 595 atatacttt-ctaggttgtataactgcacttca-tttctctaccaggaacctttcctcag 652
|||| ||| ||| ||||||||||||||| || ||| |||||| |||| ||| ||||||
Sbjct: 790 ttata-tttgctaccttgtataactgcactacagttt-tctacctggaaacttgcctcag 847
Query: 653 attctgtcctcatcaagaatcccat-ctaataccatcagacacttctatg 701
|| ||||||||| |||| ||| || | || ||||||||| | |||||||
Sbjct: 848 atcctgtcctcagcaaggatc--atgc-aacaccatcagaaaattctatg 894
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1096
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1086
Effective search space: 750426
Effective search space used: 750426
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_c08.g1 MSMg01no453_c08.g1 CHROMAT_FILE:
MSMg01no453_c08.g1 PHD_FILE: MSMg01no453_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:55 2005
(641 letters)
>mm_chrY_1656854_1657895
Length = 1042
Score = 290 bits (150), Expect = 2e-82
Identities = 434/548 (79%), Gaps = 59/548 (10%)
Strand = Plus / Minus
Query: 1 tgaccaagagtaagctaatacactatataaagc-tgtactgagaagcattaagaaggcag 59
|||||| || |||||||| |||||| ||||||| | |||||||||||||||||| |||||
Sbjct: 530 tgaccaggactaagctaacacactacataaagcat-tactgagaagcattaagatggcag 472
Query: 60 gtatctcactctgaacagggctaaggttgtttc-gactgtattggctttattcttctgga 118
||| | |||||||| ||| |||||||||||||| | ||||||||||||||| |||| ||
Sbjct: 471 gtaccacactctgaccagcgctaaggttgtttcag-ctgtattggctttatccttcaggg 413
Query: 119 gattcttgtcaggaattgcgagcat---t--taccaga-ccacaacaggaaaccttccat 172
||||| ||||| ||| || | || | || |||| |||||||||||||||||||||
Sbjct: 412 gattc-tgtca-gaaatg---g-atacctgatatcagatccacaacaggaaaccttccat 359
Query: 173 atgtctc-ctttggtgtctgggcataggatatgtgagatgcatcaagactgattaaaggt 231
||||||| |||| | ||||||||||||||||| |||||||||||| || |||||||| |
Sbjct: 358 atgtctctcttt-gagtctgggcataggatatatgagatgcatcaggaatgattaaactt 300
Query: 232 catgttccctagatgtgaatc--tgtttccaggaatacgatgatatacaaaaggtcagct 289
|||||||||||||| |||| | | ||| |||| || | ||||||| || ||||||||||
Sbjct: 299 catgttccctagatatgaaaccat-ttt-cagggatcctatgatatccacaaggtcagct 242
Query: 290 ccagaatacatagcatcaggtctttcttggccaatt--aaaattggagccaaaatctcaa 347
||| | ||| ||| |||| ||||||||||||||||| |||||| || |||| |||| ||
Sbjct: 241 ccatactacgtagaatcatgtctttcttggccaattcaaaaatt-gacccaacatcttaa 183
Query: 348 gagacaatg--tatgtattggaca---gacttgctgctatcacacaggtcgtggcttcaa 402
| |||| | | |||| || || |||||||||||||| |||| ||||||||||
Sbjct: 182 ---aaaatgactttctatt---caatggaattgctgctatcacaaaggtagtggcttcaa 129
Query: 403 tttccagcaattacattgtgactgt-t-tctctgtctctctatctgtctctctgtctctc 460
| | ||||| |||||| || || | | ||||||||||| | ||||| | ||| | ||||
Sbjct: 128 gtgcaagcaaatacatt-tggctatatctctctgtctctttgtctgtttttct-t-tctc 72
Query: 461 tgtctctctgcctctctctctttccttctaactttcccactctctgtattgctatctctc 520
||||||||| || |||||| || ||||||||||| |||| ||||
Sbjct: 71 tgtctctct------ctatctttc--tc----------actctctgtatcactatatctc 30
Query: 521 tgtatctc 528
||||||||
Sbjct: 29 tgtatctc 22
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1042
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1032
Effective search space: 651192
Effective search space used: 651192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|