Query= MSMg01no453_m13.b1 MSMg01no453_m13.b1 CHROMAT_FILE:
MSMg01no453_m13.b1 PHD_FILE: MSMg01no453_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:46 2005
(705 letters)
>mm_chrY_2872178_2873283
Length = 1106
Score = 996 bits (515), Expect = 0.0
Identities = 660/719 (91%), Gaps = 28/719 (3%)
Strand = Plus / Plus
Query: 5 gaattcacagctggtcacttgatattaagtaactaatttggttccttttttgccaaaaaa 64
||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattcatagctgatcacttgatattaagtaactaatttggttccttttttggcaaaaaa 264
Query: 65 at-aaatcagtcgctatttataacaaattttagattaataaagtcagtggactttataaa 123
|| ||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 265 ataaaatcagtcactatttataacaaattttagattaataaagtcagttgtctttataaa 324
Query: 124 aattatgaactgaattatagttggtttgacctaatgctgc-----------ttttattat 172
|||||||||||||||| |||| |||||||||||||||||| |||||||||
Sbjct: 325 aattatgaactgaattgtagtgggtttgacctaatgctgcttttattataattttattat 384
Query: 173 aattttctgcatgtacaacactgagggattctgctctgagttggttttgattggtaaatg 232
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aattttctgcatgtacaacactgagggattctgctctgagttggttttgattggtaaat- 443
Query: 233 aagattcaaccaggtaatggctggccagggcagacagaggtaggacttttaaggttccag 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagattcaaccaggtaatggctggccagggcagacagaggtaggacttttaaggttccag 503
Query: 293 agcttaaaagagagaggaagtagtacaaaggagatccatccggctgggagaagaagaggt 352
||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 504 agcttaaaacagagaggaagtagtacaaaggagatccatcaggctggg---agaagaggt 560
Query: 353 gaaatgccatacctgagaagagtggagggcaggagtcatagccagaatttgaaggtgctg 412
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 gaattgccatacctgagaagagtggagggcaggagtcatagccagcatttgaaggtgctg 620
Query: 413 gagagggcgcacagac-ttctgacta---ccactagctacccacaacaaccaccaagcga 468
|||||||| ||| | | || |||||| || |||||||| ||||| || ||||||||
Sbjct: 621 gagagggcacactgtcatt-tgactattgcc---agctacccccaacacccgccaagcga 676
Query: 469 acttaagccctctggtgagtggaactaagcatctgctccaatccaaactcgcgggacttg 528
|||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 677 tcttaagacctctggtgagtggaactaagcatctgctccaatccaatcttgcgggacttg 736
Query: 529 acacggcattagtcagagaagcaaaaacccggtctgagtaggggcacaagccccttttgg 588
|||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 737 acactgcattagtcagggaagcaaaaacccggtctgagtatgggcacaagccccttttgg 796
Query: 589 tccgagcagcaccggggtagctatggcgcacagtcggctaacta-cagccagatacacac 647
||||||||||||||||||||||| ||||||||||||||| |||| || |||||||| |||
Sbjct: 797 tccgagcagcaccggggtagctagggcgcacagtcggctgactatca-ccagatacgcac 855
Query: 648 aacaccagccaggccaccttaagaattctgaggattgggatctgc-ctggcacgggagc 705
||||||||||| |||| |||||||||||||||||||||||| ||| | |||||||||||
Sbjct: 856 aacaccagccaagccatcttaagaattctgaggattgggatatgcgc-ggcacgggagc 913
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1106
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1096
Effective search space: 761720
Effective search space used: 761720
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no453_m13.g1 MSMg01no453_m13.g1 CHROMAT_FILE:
MSMg01no453_m13.g1 PHD_FILE: MSMg01no453_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:46 2005
(609 letters)
>mm_chrY_2870164_2871172
Length = 1009
Score = 859 bits (444), Expect = 0.0
Identities = 565/610 (92%), Gaps = 11/610 (1%)
Strand = Plus / Plus
Query: 4 tttgcttttctcttgtttctccaattacttcagcaagattctgcgttgccttttgttttg 63
|||||||||||||||||||||||||||| || ||||||||||| || ||||||||||||
Sbjct: 204 tttgcttttctcttgtttctccaattacagcaccaagattctgcatttccttttgttttg 263
Query: 64 gaagattctcgaggaatcctaaatccagactttagggcagttattaaaaattcttactgg 123
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 264 gaagattctcgatgaatcctaaatccagactttagggcagttatttaaaattcttgctgg 323
Query: 124 tcgttctgacaatggtttcctcttctttttttttttttaattagatattttttcatttac 183
| |||||||||||||||||||| |||||||| |||||| |||||||||||||||
Sbjct: 324 tggttctgacaatggtttcctc------attttttttaaattaggtattttttcatttac 377
Query: 184 atttccaatcctatcccaaaagtcctcccatacccacctcaaccccacc---accaccac 240
||||||||| ||||||||||||||| |||||||||||||||||| |||| ||||||||
Sbjct: 378 atttccaatactatcccaaaagtccccccatacccacctcaaccacacccctaccaccac 437
Query: 241 ccccatatcttgtcgctggcatacccctgaactaaggcatataaagtttgcaagactgat 300
| ||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 438 caccacatcttgtccctggcatacccctgaaataaggcatataaagtttgcaagactgat 497
Query: 301 gagcctctctttccaatgatgttcaactagtccgtcttctgatacaaatgcagccagaaa 360
| | ||||||||||||||||| |||||||||| ||||||||||||| |||||| |||||
Sbjct: 498 ggggctctctttccaatgatgaccaactagtccatcttctgatacaactgcagctagaaa 557
Query: 361 tacgagcactgataagttgctagaaaaatgagctctgcg-gggtttctttagttcatatt 419
| |||| |||||| | |||||||||||||| |||| | ||||||||||||||||||||
Sbjct: 558 catgagctctgatatgcagctagaaaaatgagttctg-gagggtttctttagttcatatt 616
Query: 420 gttgttccacttatgggattgcagacccctttagctccttgggaaccttctctacctcct 479
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 617 gttgttccacttatgggattgcagacccctttagctccttgggtaccttctctacctcct 676
Query: 480 ccatttcggtccctgtgattcatccaatagctgactgtgagcatccacttctgtgtttgc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ccatttcggtccctgtgattcatccaatagctgactgtgagcatccacttctgtgtttgc 736
Query: 540 taggccatggcatagcctcacaagagacagctaaatctgggtccttccagcaaaatcttg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 taggccatggcatagcctcacaagagacagctaaatctgggtccttccagcaaaatcttg 796
Query: 600 ccagtgtatg 609
||||||||||
Sbjct: 797 ccagtgtatg 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
