BAC Information

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BAC

Clone NameMSMg01-457M14
ChromosomeY (Build37)
Map Location 1,635,666 - 1,635,910
singlet/doubletsinglet
Overlap geneLOC100039381
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373
Downstream geneLOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457M14.T7 (MSMg01no457_m14.b1)MSMg01-457M14.TJ (MSMg01no457_m14.g1)
ACCAG543770AG543771
length621805
length of high quality
(start - end)
---245 (81 - 325)
definitionCHROMAT_FILE: MSMg01no457_m14.b1 PHD_FILE: MSMg01no457_m14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:08 2005CHROMAT_FILE: MSMg01no457_m14.g1 PHD_FILE: MSMg01no457_m14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTTTTCTCTCTCTCCCCTTATTTNNNNNNNGCACAAGNNNTTCTCXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAAAGAGTCCGCGGAAATTC
TCACCCTTTTCCACATACACAAAAATGGCTAAGAAAAGCACCTNGAAAAC
AATGTTCAACATCCTTTAATCCAGCAGTGACATGTAAATCANAACAACCC
TGAGATTCAATCTCACACCCAGTCAGAAAGGGCTAAGATCAAATATTCAG
AATGACAGGCAGAATGGCTGGCCACGGAATGTTGGAAAAAAAGCATAAAA
AATCTCCCCCCCATTGTGTTGGGTGGGTATATTTTTGCCAAAGGTTTTTT
TAAAAATCCCCCACTTCCTCCGGGAAAAAATTCAAAACTTTGGGGGGGCG
TTTTTCTTTTCACAAAAAAAAAAGNGGGGCAAAACGGGGAAATTTTTTTT
TTTTTTTAGAGGCCNCCCCCCAAAAAAAAAAACTCTCCCTTTCCGTGGGG
GGTGTGGTTCNNCTTATTTTTTTTTTATTTTTATTTGTTTNNTGTTTCCN
CATTTCCCTCTATCNTTTATAAGCATTTTTTGACTTCAACACNCTCTACA
TTCTTCTTCTTTTTCTCTTTT
NNNCCCGATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAACCAAATCCATTTTT
CTTGTGGTGCAAAAGTGCTTGTTACCATTGATTCATCTCTCTAATCCCAT
AAAGATATCTTTTTTAAGAAATCCAAAATTCACATGCATAAAACAGACCA
GATTGAAGATAAGAAAGTTCTAATTGATGGTGACCATTAAAAGCAATAAG
GGACACACAAATTGTAGAGGACACTGAGAGACAAATGAATTCTAAGTTGG
AGTTCTCAAAAAGTTAAGCTGGAGACTCAGTAATTAGAGAAATTTTAAGG
AAATAGTAAAACTTGGTTTATATCCACATTGGCTTCTTTGATTTCTTATC
AAATAGCCAGTCTGTCATTACACACGCCTCGTGTTTGTGTGTTTCTTTTA
TTTATCTCTCCACTTTACATTTTCTTTTCTTTTCTCCCTCTTTATTTTTC
CCCCTATTTCTACTCTATTTTATTTTCTGCTAACTTTTTTTTTTTCCACC
TCTTTTTTTTCTAATTGGTTCTCTTTTTTTTCCTCTCCTTTCCCTTTTTT
TATTCTGTCCACTCTTTCCCCTATTTCCTCTCCCCTTTTTCCTCCCTTCT
TCTCATTTTTTCTCCTTTCTTTTTTTCTTCGTCTTTTTACTTCCCACTTT
TTTTTTTTTTTCTTTTTTTCCCTTCGCCTTCTTCCCCCCTTTTTTTACTC
CCTCCTTTTTTCTTACCTTTTTTCCCCTTCCTACTTTTCTCTTTCCCCTC
TCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_m14.g1 MSMg01no457_m14.g1 CHROMAT_FILE:
MSMg01no457_m14.g1 PHD_FILE: MSMg01no457_m14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:08 2005
         (245 letters)



>mm_chrY_1635466_1636110
          Length = 645

 Score =  217 bits (112), Expect = 6e-61
 Identities = 214/250 (85%), Gaps = 10/250 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaaaccaaatccatttttcttgtggtgcaaaagtgcttgttaccattgattcatctct 60
           |||||||| |||||| | |||||   |||||||||||||||||| || ||| ||||||||
Sbjct: 445 aagaaaccgaatccagtcttcttacagtgcaaaagtgcttgttaacactgagtcatctct 386

                                                                       
Query: 61  ctaatcccataaagatatcttttttaagaaatccaaaattcacatgcataaaacagacca 120
           ||||||||||||||||||| |||||||||||||||| ||||||||||| |||| ||||||
Sbjct: 385 ctaatcccataaagatatc-tttttaagaaatccaatattcacatgcagaaaagagacca 327

                                                                       
Query: 121 -gattgaagataagaaagttctaattgatggtgaccatt-aaaagcaataagggacacac 178
            || ||||| |||||||| || |||||||||| ||| || ||||| || || ||||||| 
Sbjct: 326 gga-tgaaggtaagaaagatcaaattgatggttacctttaaaaag-aacaaaggacacaa 269

                                                                       
Query: 179 aa---attgtagaggacactgagagacaaatgaattctaagttggagttctcaaaaagtt 235
           ||   |  ||||||||||||||| |||||| |||||||||| |||||| |||||||||| 
Sbjct: 268 aaagga--gtagaggacactgagggacaaaagaattctaagatggagtcctcaaaaagtg 211

                     
Query: 236 aagctggaga 245
           |||| |||||
Sbjct: 210 aagcaggaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)