BAC Information

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BAC

Clone NameMSMg01-464P21
ChromosomeY (Build37)
Map Location 1,655,269 - 1,655,808
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143
Downstream geneLOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464P21.T7 (MSMg01no464_p21.b1)MSMg01-464P21.TJ (MSMg01no464_p21.g1)
ACCAG549277AG549278
length769778
length of high quality
(start - end)
549 (71 - 619)435 (72 - 506)
definitionCHROMAT_FILE: MSMg01no464_p21.b1 PHD_FILE: MSMg01no464_p21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:55 2005CHROMAT_FILE: MSMg01no464_p21.g1 PHD_FILE: MSMg01no464_p21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:55 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGGA
ATTCTCTGTATAGTTACGGATACATTGTCTCATGGGAAGGGGGAGTGTGG
ATTCCCTGTGGTTACTAATATAGAAGAAGTTGTAAACAGCCTATGGAAAT
GTGGCAAGTCCAAGTGTATGCTGTGCATGAGCTGCCAGTGTTCAGAAATG
CTGAGCCATCACTTCAGATTCAATAAGATATTTAAAGAAGAAAACCAGAA
GAAAAAACTTAAGGGGACTGTTGTGAATTTTAATGAGACATTTTTAATTA
TTTTTACTGATTTATATAACATATTTCTTATGGTGTGTCCAGTCTTTTAA
ACATGGCTTGATTGTTCCTTTCAAAGTATCTTGATTATTATTCCCAGAGA
CAGGATTTACAATCTGTACATTCAAATTCTTATTTGTACTTCCCAATTTC
CCCTGTTTCTTTTGTTTTTCTTCTCTGGAACTGGATATTTCTGTATAGTC
CTAGATTTCTGTGCTTTCCTGTGCAGATCAGCAGAGAATTCATCTCTACC
TGGTTTTGATTCCCATATCCTGAGATTAAAGTCCTTTCTAAGCAGATCTC
AACACCTTTTTTTTAAAATTTTCTGTCTCACAGTTCTTGAAAAATAGATG
GGGGAGCAGATAATATTTCTCCCCAAAACATTTGGCATTATTTGGCTGCA
CGTGTGAGGGCCAGTTTTTCTTCATAGATTTGGCTCCTTAAACGCCGTCC
ATTGTTTCCCTGTTATGGG
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCTTGATTTTTATCATGAAT
GGGTGTTGGATTTGTTTAAATGATTTCTCAGCATATAACGAGATGATTAT
GTGGTTTTTGTTTTTGAGTTTCTTATGTAGTGGATTACGTTGATGTGTTT
CCTTATATTAAACCATCCCTAAATCCCTAGGATGAAGCCTACTTGATCAT
TATTGATGATTTTTGTGATATGTTCTTGGATTCAGTTTGCATGGACTTTA
TTAAATATTTTTGCATCGATATTTATAAGGGAAATTGGTCTGAAGTCTTC
TATTTTGTTGGGAATTTATGTGGTTTAGTTATCAGAGTAATTGTGGCTTC
TATAGAATTAATTGAATAGAGTACCTTCAGTTTCTATTTTATGGAATAGT
TTCGGGACAGTTGGAATTAGTTCTTTTTTGAAGGTCTGATAGAACTCTGC
ACTAAACCCATGTGGGCTGTCCTGGGCATTATTTTGGTGGGAGATTATTA
GTGACTACTTCCATTTTCTTAAGGGGTATGGGGCTGTTTACATCTTTATT
CTGATCTGGATTTAATTCGGGTCCTGATTTCCGTCTTAATATTGTCCTTT
TTTTCAATTCCTCCTACCTGGTTTCGAATTCTCTTTTGTCCATTCTCGCT
TTTTTTTTTCTCTTTCAACTTCTCGGCTTCATCTCTTTCTCTTTATATCA
ATTTTTCTCTTCTTACACTCTTCTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_p21.b1 MSMg01no464_p21.b1 CHROMAT_FILE:
MSMg01no464_p21.b1 PHD_FILE: MSMg01no464_p21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:55 2005
         (549 letters)



>mm_chrY_1655069_1656016
          Length = 948

 Score =  420 bits (217), Expect = e-121
 Identities = 469/559 (83%), Gaps = 37/559 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacattgtctcatgggaagggggagtgtgg-attccctgtggttact-aatatagaagaa 58
           ||||||||| ||||||||| |||||||||| | |||||||||| ||| ||  |||| | |
Sbjct: 740 tacattgtcccatgggaagagggagtgtggca-tccctgtggtcactgaa-gtagacgga 683

                                                                       
Query: 59  gttgtaaacagcctatggaa-atgtggcaagtccaagtgtatgctgtgcatgagctgcca 117
           |||||||| |||| |||||| | ||||||||||||||||||||||||| ||| |||| | 
Sbjct: 682 gttgtaaagagccaatggaaga-gtggcaagtccaagtgtatgctgtgtatgtgctggcg 624

                                                                       
Query: 118 gtgttcagaaa-tgctgagccatcacttcagattcaataagatatttaaagaa-gaaaac 175
           |||| |||||| | |||| | ||| || |||||||||||||| ||||||| || ||||||
Sbjct: 623 gtgtccagaaagt-ctgatcaatccctccagattcaataagacatttaaa-aaggaaaac 566

                                                                       
Query: 176 cagaagaaaaaacttaaggggactgttgtgaattttaatgagacatttttaattattttt 235
           || |||| ||||| |||||||| | || | | ||||||||| |||||||||||| ||| |
Sbjct: 565 cacaagagaaaacataaggggaatattttcatttttaatgacacatttttaattgtttct 506

                                                                       
Query: 236 actgatttatataacatattt--cttatggtgtgtccag-tcttttaaacatggcttgat 292
           |||||||||||||||  ||||  | ||| ||||||| || |||||||  ||||| || ||
Sbjct: 505 actgatttatataac--atttgccatattgtgtgtctagttcttttactcatggtttcat 448

                                                                       
Query: 293 tgttcctttcaaa-gtatcttgattattattcccagagacaggatttacaatctgtacat 351
           ||||||||| ||| || ||||||||||||||| |||||||||||||||||||| | ||||
Sbjct: 447 tgttccttt-aaaggtgtcttgattattattctcagagacaggatttacaatcag-acat 390

                                                                       
Query: 352 tcaaattctta---tttgtacttcccaatt--tcccctgtttcttt-tgtttttcttctc 405
           |||    ||||   ||||  ||| ||||||  || ||| ||| ||| |||||||||| ||
Sbjct: 389 tca----cttattttttg--cttaccaattcctctcct-ttt-tttctgtttttcttttc 338

                                                                       
Query: 406 tggaactggatatttctgtatagtcctag-atttctgtgctttcctgtgcagatcagcag 464
           ||| |||| || |||||| ||||||||||  ||||| ||| ||||||||||| |||||||
Sbjct: 337 tgggactgcatttttctggatagtcctagtttttctatgccttcctgtgcagttcagcag 278

                                                                       
Query: 465 agaattcatctctacctggttttgattcccatatcctgagattaaagtcctt-tctaagc 523
           |||||||||| ||| ||||||||||||||||||||||||||||||| ||| | |||||||
Sbjct: 277 agaattcatcactatctggttttgattcccatatcctgagattaaa-tccctctctaagc 219

                              
Query: 524 agatc-tcaacaccttttt 541
           ||| | |||||||||||||
Sbjct: 218 aga-catcaacaccttttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 948
Length adjustment: 10
Effective length of query: 539
Effective length of database: 938
Effective search space:   505582
Effective search space used:   505582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)