BAC Information

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BAC

Clone NameMSMg01-467L22
ChromosomeY (Build37)
Map Location 1,266,148 - 1,266,745
singlet/doubletsinglet
Overlap genenone
Upstream geneJarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467L22.T7 (MSMg01no467_l22.b1)MSMg01-467L22.TJ (MSMg01no467_l22.g1)
ACCAG551380AG551381
length745754
length of high quality
(start - end)		602 (39 - 640)563 (68 - 630)
definitionCHROMAT_FILE: MSMg01no467_l22.b1 PHD_FILE: MSMg01no467_l22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:42 2005CHROMAT_FILE: MSMg01no467_l22.g1 PHD_FILE: MSMg01no467_l22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:42 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
TCAAATTAACTGTATGAAGTTCTCAAGAAATTAATTACTGTGGTTCTTAA
TATACAATGTCTGTACTGAACATATACAGACCACTTATATTTCAATCTCC
TAAATAGCAACTCATTTTATAGCACTTACATTACATTAAGTGCAAAAGTA
ATCCAGAGATTATTTAAAATAAAGAAGGATCAGGGGATATGGCCCAGAGA
CAATGCCATGTGTGTGTTCAAACATTCACCTACAACACCAGTGCTTATGA
TTTTGGGAGGGGCTTAGACAGGAAGATGACTGTGGCTTCCTGAAAGCCAG
CCTCACTACCAGCTCAGCAAGAAACCCAGTCACAAGGGGATAAGTTATGG
AGGAAAAGAGTAGATCACACTATACCCTTCCCTAGCCTCTGAACTTACCT
GTACAGTTCTCTATGCAGACTCACATAAATATGATTAAAATATGCAAGAG
GTTATTTTGCATAGCTTATATTCAAAAGCAATGTTGTTTTAGACTAGAAA
CCTGAGGACTTTATATCATTATAGTTCCTGGAGCANACTCCCAAGATATA
GATGATGGGTATATCTTCTTACTGTGCAAAGGAAACCTCAGTTAAGTGTG
TGTGTCAGTGACTCCAAACAGCTTTCCTCCTCTATGTTCCTTTAAATAGC
ATAGAATGATCTGGAAATGATGAAAATATTAAAACAAAGGCTTTT

TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTACATGATTACAAAAGAGGTCGAATATACAT
GACATAGTCTTTAGTTGAATTGAACTTGTATTAAGAGAAATTTGACAAAA
AATAATATTTACTCTATGGGTGCTTTCAAAAAATAGAATGGTTTGCATGG
AAATAGTTAGTATTGGAAGAATTAGAAGTTCCAAGCTATCCTTGGTTACA
TACTAAGTTGGGGCCAGCCTAGGCTATATGACATCCTGTCTGAAAATAGG
AAATTACAGGAACCAGTAGTTTATCTTTATGAATCCTGTACTTTGGAGAC
TGAATCATGAGCAATATCAGAAGTACAAGGTCTATCAGTACCAGAAAGTA
TAAAAAGAATTTCCCCAAACAAAAATAATTTAAGAGTTATACTTAGGGGC
GTGATTATGTTGCCAGGGAATAAAAGCACTTTGAGTTTAGAGTGGTCAGT
AATGAGGAGTGAGTATTGCCCTTGCACAGGACTCACATTGGGTAGCTCAC
AATCACCCTTAGCTTGAGCTTCAGGAGGTCTCTGGCACCTGTGGGCATGT
GCATTTCCTTACATACATATGTACGTACCAACACATACACACACATACAC
ACACACACACATACACACTCATACTTAGACTCTCACACACTCTCACACAC
TTTTTCTCTTATACACTTTTTAATAAAAAGGGAAAAAGAATTTTGTTTTT
ATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_l22.b1 MSMg01no467_l22.b1 CHROMAT_FILE:
MSMg01no467_l22.b1 PHD_FILE: MSMg01no467_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:42 2005
         (602 letters)



>mm_chrY_1265943_1266945
          Length = 1003

 Score =  514 bits (266), Expect = e-150
 Identities = 521/611 (85%), Gaps = 27/611 (4%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattccatcaaatta-actgtatgaagttctcaagaaattaattactgtggttcttaata 64
           |||||||||||| || | |||||||| |||||||| ||||||| |  || ||||||||||
Sbjct: 206 aattccatcaaaatatattgtatgaaattctcaaggaattaatgaaagtagttcttaata 265

                                                                       
Query: 65  tacaatgtctgtactgaacatatacagaccacttatatt-tcaatctcctaaatagcaac 123
           ||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||
Sbjct: 266 taccatgtctgtactgaacatatacagaccacttatattgtca-tctcctaaataacaac 324

                                                                       
Query: 124 tc--attttatagcacttacattacattaagtgcaaaagtaatccagagattatttaaaa 181
           ||  ||   |||||| || |||| ||||||| |||||||| |||||||||| ||||||||
Sbjct: 325 tcctat---atagcagtttcattgcattaagggcaaaagtcatccagagatcatttaaaa 381

                                                                       
Query: 182 taaagaaggatcaggggatatggcccagag--acaatgcca-tgtgtgtgttcaaacatt 238
           |||||||||||||||  | ||||||||| |  | || |||| | ||| || ||| |||||
Sbjct: 382 taaagaaggatcaggcaagatggcccaggggta-aa-gccaat-tgtttggtcagacatt 438

                                                                       
Query: 239 cacctacaacaccagtgcttatgattttgggaggggcttagacaggaagatgactgtggc 298
           |||||| |||| ||||||| | |||   |||||||||  |||||| |||| |||||||||
Sbjct: 439 cacctataacaacagtgctcaggatg--gggaggggcagagacagaaagaagactgtggc 496

                                                                       
Query: 299 ttcctgaaagccagcctcactacc-agctcagcaagaaacccagtcacaaggggataagt 357
           ||||||||||| ||||||||| || || |||||||||||||| |||| ||||| | || |
Sbjct: 497 ttcctgaaagcaagcctcact-cctaggtcagcaagaaaccctgtcataagggaacaaat 555

                                                                       
Query: 358 tatggag-gaaaagagtagatcacactatacccttccctagcctctgaacttacctgtac 416
           || |||| |||  ||| ||| |||||| |||| |||||| ||||||||| ||||||||||
Sbjct: 556 tagggagtgaag-gagcagaacacactgtacctttccctggcctctgaatttacctgtac 614

                                                                       
Query: 417 agttctctatgcagactcacataaatatgattaaaatatgcaagaggttattttgcatag 476
           || ||| |||||| || |||||||||||||||||| ||| |||||||||| |||||||||
Sbjct: 615 aggtctgtatgcacacacacataaatatgattaaagtatacaagaggttactttgcatag 674

                                                                       
Query: 477 cttatat-tcaaaagcaatgttgttttagactagaaacctgaggacttt-atatcattat 534
            |||||| | ||||||||||||||||||| ||||| ||||||||||||| ||||||||| 
Sbjct: 675 attatatgt-aaaagcaatgttgttttagcctagagacctgaggacttttatatcattag 733

                                                                       
Query: 535 agttcctggagcanactcccaagatatagatga---tgggtatatcttcttactgtgcaa 591
            | |||||||||| |||||| | ||||||| ||   ||||||||||||||||||||||||
Sbjct: 734 gggtcctggagcaaactccccatatataga-gagaatgggtatatcttcttactgtgcaa 792

                      
Query: 592 aggaaacctca 602
           |||||||||||
Sbjct: 793 aggaaacctca 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1003
Length adjustment: 10
Effective length of query: 592
Effective length of database: 993
Effective search space:   587856
Effective search space used:   587856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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