BAC Information

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BAC

Clone NameMSMg01-467P02
ChromosomeY (Build37)
Map Location 1,311,455 - 1,311,904
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467P02.T7 (MSMg01no467_p02.b1)MSMg01-467P02.TJ (MSMg01no467_p02.g1)
ACCAG551530AG551531
length744728
length of high quality
(start - end)
419 (44 - 462)463 (74 - 536)
definitionCHROMAT_FILE: MSMg01no467_p02.b1 PHD_FILE: MSMg01no467_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:57 2005CHROMAT_FILE: MSMg01no467_p02.g1 PHD_FILE: MSMg01no467_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTTGTTTCTCAGTGTCCTCTACTCTTTGTGTGTCCCTTATTACTTT
TAATGGTCACCATCAATTAGAACTTTCTTATCTTCAATCTGGTCTGTTTT
ATGCATGTGAATTTTGGATTTCTTAAAAAAGATATCTTTGTGGGATTAGA
GAGATGAATCAATGGTAGCAAGCACTTTTGCACCACAAGAAAAATGGATT
TGGTTTCTTGATTTCATATTCAATGGCAAATAATCACCTTTAATGGCAGC
TCCAGAGGACCTGACTTCGCATGTCTCTGTGTTCACCTGTACTCAAAAGC
ACATGCCATATCCCCACCCACATAAGTAAAGATAATAAATCTTAAAATGT
GAGACAGGTTTCTTTAAGTGTCATTATTCAAAGAAAACCTGATTTTCTCT
GATTTCTGAGTCTATTTCAATCAGTTTTCTGGGTTTCACCTTGCGCAACA
TAGGCCACATTTCTTTTAAATGTCCCACTTTCCCAAAATTTTTGTTTCTC
CTTCAGCCTTCCCATTATAGGTTCTACCTAAGTCTTGTNCCTTTTTTCCT
TATTCCTAAACATTTATTTTTTTTCCGGCATTTCCGGCTCCCTCCTTAGT
TCATTTTCCTTTTTCTTATTCTTCCCTGCCTATCCCAATAAACTTTTCTT
TTCTTATTCCCGTATGTATTTATTGTCGTATTGCCTTCGCTTAG
ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATCAAAAAAATTGTATGAAGTTCTCA
AGGAATTAATTAATGTAGTTCTTAATATACAATGTCTGTACTGAACATAT
ACAGACCACTTACATTTCAATCTCCTAAATAGCAACTCATTTTATAGCAC
TTACATTACATTAAGTGCAAAAGTAATCCAGAGATTATTTAAAATAAAGA
AGGATCAGGGGATATGGCCCAGAGACAATGCCAGGAGTGTGTTCAAACAT
TCACCTACAACACCAGTTCTTGAGATTTTGGGAGGGGCAGAGACAGGAAG
ATGATTGTGGCTTCCTGAAAGCCAGGCTCACTATCAGCTCAGCAAGAAAC
CCAGTCACAAGGGGATAAGTTATGGAGGAAAAGAGTAGATCACACTATAC
CCTTCCCTAGCCTCTGAACTTACCTGTACAGTTCTCTATGCAGACTCACA
TAAATAAGATTAAAATATGCAAGAGGCTTTTTTGCATAGCTTATGTTCAA
AAGCAGTGTTGTTTTACACTACAAACCTGAGGACTTTAAATCATTATCGT
TCCTGGAGCACACTCCCAAGGTATAGATGATGCGTAAATCTTCTTACTGC
GTTAAGGACACCTTCCGCAAACGCGCGTGTTCCATGATTCCAAACGATTT
CTCCCCCCCAAGGTCCCTCTTAAAACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_p02.g1 MSMg01no467_p02.g1 CHROMAT_FILE:
MSMg01no467_p02.g1 PHD_FILE: MSMg01no467_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:58 2005
         (463 letters)



>mm_chrY_1311044_1311904
          Length = 861

 Score =  354 bits (183), Expect = e-102
 Identities = 390/467 (83%), Gaps = 31/467 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcaaaa-aaattgtatgaagttctcaaggaattaattaatgtagttcttaatata-ca 58
           |||||||| | ||||||||| ||||||||||||||||| || || |||||| ||||| ||
Sbjct: 861 catcaaaatatattgtatgatgttctcaaggaattaataaaagtggttctttatatacca 802

                                                                       
Query: 59  -atgtctgtactgaacatatacagaccacttacatttcaatctcctaaatagcaactcat 117
            |  |||||||||||||||||||||||||||| ||| | |||||||||||| |||||| |
Sbjct: 801 ca--tctgtactgaacatatacagaccacttatattgccatctcctaaataacaactcct 744

                                                                       
Query: 118 tttatagcacttacattacattaagtgcaaaagtaatccagagattatttaaaataaaga 177
           | ||||||| || |||| ||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 743 tgtatagcagtttcattgcattaagggcaaaagtaatccagagatcatttaaaataaaga 684

                                                                       
Query: 178 aggatcaggggatatggcccagag--acaatgccaggagtgtgt--tcaaacattcacct 233
           | || | | ||| ||||||||| |  |    ||||  |||| ||  ||  ||||||||||
Sbjct: 683 aagacctgtggagatggcccaggggta----gcca--agtgagtgatcccacattcacct 630

                                                                       
Query: 234 acaacaccagttcttgag-attttgggaggggcagagacaggaagatgattgtggcttcc 292
           |||||| |||| ||| || ||   ||||||||||||||||||||||||| ||||||||||
Sbjct: 629 acaacaacagtgctt-aggatg--gggaggggcagagacaggaagatgactgtggcttcc 573

                                                                       
Query: 293 tgaaagccaggctcactatc--agctcagcaagaaacccagtcacaagggga-taagtta 349
           |||||||||| | ||||  |  |||||||||||| |||  |||||||||| | ||| |||
Sbjct: 572 tgaaagccagccccact--cctagctcagcaagagacctggtcacaaggg-agtaaatta 516

                                                                       
Query: 350 tggag-gaaaagagtagatcacactatacccttccctagcctctgaacttacctgtacag 408
            |||| |||  ||| ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 515 gggagtgaag-gagcagagcacacaatacccttccctagcctctgaacttacctgtacag 457

                                                          
Query: 409 ttctctatgcagactcacataaataagattaaa--atatgcaagagg 453
            ||| |||||| || |||||||||| |||||||  ||||  ||||||
Sbjct: 456 gtctgtatgcatacacacataaatatgattaaagtatat--aagagg 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 861
Length adjustment: 10
Effective length of query: 453
Effective length of database: 851
Effective search space:   385503
Effective search space used:   385503
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)