Query= MSMg01no469_f12.b1 MSMg01no469_f12.b1 CHROMAT_FILE:
MSMg01no469_f12.b1 PHD_FILE: MSMg01no469_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:54 2005
(549 letters)
>mm_chrY_2494481_2495429
Length = 949
Score = 1017 bits (526), Expect = 0.0
Identities = 538/542 (99%)
Strand = Plus / Plus
Query: 5 gaattctgcattccactgcattgttccattagaagccaactcaccagcaggtagcagctg 64
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcagaccaatgcattgttccattagaagccaactcaccagcaggtagcagctg 264
Query: 65 ctccaactgctgtctccagtggcacctaacaaaagcaacctgcagaggtagtgatctgat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctccaactgctgtctccagtggcacctaacaaaagcaacctgcagaggtagtgatctgat 324
Query: 125 catggtcccaccaaggtgactttgacttctgatgggggcgggaacttacctgctatgaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catggtcccaccaaggtgactttgacttctgatgggggcgggaacttacctgctatgaga 384
Query: 185 cctttgccctcttgatgtgttcacccaacatatcactcctcttggaaagcccaggaagga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctttgccctcttgatgtgttcacccaacatatcactcctcttggaaagcccaggaagga 444
Query: 245 gttccttgtccaaagtgcctcctcttgtctgtggtattcatgcctagggggtggggagta 304
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 gttccttgtccaaagtgcctcctcttgcctgtggtattcatgcctagggggtggggagta 504
Query: 305 ggctctatttctgggatactctgtttctttgtgaggtgacacacagtgatcactcttgcc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggctctatttctgggatactctgtttctttgtgaggtgacacacagtgatcactcttgcc 564
Query: 365 tccctttcccagaagaatgagactcctagtctagacatcatttctttttgttttcaatct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tccctttcccagaagaatgagactcctagtctagacatcatttctttttgttttcaatct 624
Query: 425 gtgaaggcaggtatggttgttgtatacatgacagtttgcatggacacttcatatgtgtaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtgaaggcaggtatggttgttgtatacatgacagtttgcatggacacttcatatgtgtaa 684
Query: 485 tacagcagaggacaaaagagggcacagcagcatatgctgctggagttacaggtaggatga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tacagcagaggacaaaagagggcacagcagcatatgctgctggagttacaggtaggatga 744
Query: 545 aa 546
||
Sbjct: 745 aa 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no469_f12.g1 MSMg01no469_f12.g1 CHROMAT_FILE:
MSMg01no469_f12.g1 PHD_FILE: MSMg01no469_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:54 2005
(245 letters)
>mm_chrY_1635398_1636043
Length = 646
Score = 344 bits (178), Expect = 2e-99
Identities = 229/246 (93%), Gaps = 3/246 (1%)
Strand = Plus / Minus
Query: 1 tcaaggaaccaaatccagtcttcttgcagtgcaaaagtgcttgttaccactgagtcatcc 60
||||| |||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 515 tcaagaaaccgaatccagtcttcttacagtgcaaaagtgcttgttaacactgagtcatct 456
Query: 61 ctctaatcccataaagatat-attttaagaaatccaatattcacatgcagaaaagagatc 119
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 455 ctctaatcccataaagatatctttttaagaaatccaatattcacatgcagaaaagagacc 396
Query: 120 aggatgaaggtaagaaagatcaaattgatggtgatctttaaaaagaacaaaggacacact 179
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 395 aggatgaaggtaagaaagatcaaattgatggttacctttaaaaagaacaaaggacacaaa 336
Query: 180 taggagtagaggacactaagggg-aaaatgaattctaagatggagtcctcaaaaagtgaa 238
|||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||
Sbjct: 335 aaggagtagaggacactgagggacaaaa-gaattctaagatggagtcctcaaaaagtgaa 277
Query: 239 gcagga 244
||||||
Sbjct: 276 gcagga 271
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 646
Length adjustment: 9
Effective length of query: 236
Effective length of database: 637
Effective search space: 150332
Effective search space used: 150332
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
