BAC Information

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BAC

Clone NameMSMg01-471K20
ChromosomeY (Build37)
Map Location 1,655,846 - 1,656,403
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143
Downstream geneLOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471K20.T7 (MSMg01no471_k20.b1)MSMg01-471K20.TJ (MSMg01no471_k20.g1)
ACCAG554389AG554390
length7481,203
length of high quality
(start - end)		587 (70 - 656)---
definitionCHROMAT_FILE: MSMg01no471_k20.b1 PHD_FILE: MSMg01no471_k20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:00 2005CHROMAT_FILE: MSMg01no471_k20.g1 PHD_FILE: MSMg01no471_k20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAATATTCCAATCTCTTCAATCTGTCTCACCAATCATACAT
TAGGTCCAATGCTTGGGTGCTTTCTGTTTCAGGCTCACAATGATCAATGG
TATATACTTTCTAGGTTGTATAACTGCACTTCATTTCTCTACAGGAACCT
TTCCTCAGATTCTGTCCTCATCAAGAATCCCATCTAATACCATCAGATAC
TTCTATGCATCAGAGGGAACAAGGTCTAGCTGTGTGCCTTGCAGGTTGGG
TAGAGCACTGTCAATATCCCTTCTCCTCCAGCAAACCCTCTCAAGGCTCA
CAACGGTTGTCTTCCAGAATAAAATCTGATTGCCTAAGAGAAGGAGCAAA
TCATCTCTGCTTGCTCTAATGTCTAAATGACATTGCAGATTAAGAAAAAA
CATGGAGCTTCCCTAAGATTCTCAGTCCGGAAGCATTTGGACAATCCATT
ACTTTCATAGGGTCCAAAATTGTTTGAATTCTACAGACCAATGAATTGTC
CCATTAGAAGCCAACTTTCCAGCAGGTAGCAGCAGCTCCAACTGTTGTCT
CCAAAGGCAGTTAAACAAAAGCAACCTGAAGAGGCAGGTGAAATGCTCCT
GGTCCCACCAAGGTGACTTTGGTTTCTGGTGGGAGGGGGCAATTACATGC
TGTGAGAACTCTGTTCTGTTGATGTGCTCACCCACAAAACACTCCTCT

TTCTATCTCCTTCCGGCTGTATTTCCGGGTAGGTAGCAAGTTGTCTCACC
CCAACACTTGCGCCGCCCGACGCTCTTTGAGTTACCTNAGGGGGAAGTTG
TACGGTTAAGTGGGAGGGGAATAGTGGGCTCGAGGCTAACCACCCTGTGT
GCGTTACGCGTTATCGTCTCGCCGCACTCCCAAAAATTCACCACAAATAA
AACCGTACTCCACACTTTATGTAGCACAGCGAGTCCGCGTTTGCGGTAGT
TATAAAGACGCGCGCCAATTCTACACTCGTACGAATAAATAAGCATAACG
TACAATTACACACAATAGGCGAACGTCAATCACATATAATAAATAAGAAC
GGCGGTAAAGTTTGTGTTGATGAAACGCATAGGAGCATTCTGGCCTCGAT
GGCGCGCCGATTCGCGATCAGGAGCTATCATCAGCCAGGGTTCGGCCGCC
GCTCTCTCTACGCGACGCCGGTGTCTATGTGTTTTGTGCTTTCTTATAAT
TAACGCCACGCTTCGCCGCGTATACAATATTCACTATCCATACAATAAAC
ATCATCTCTCGTGACCGCGACTATATAATTTATCTATTACTAGCAAGTCA
CCGCGTGGTTGTTTTGCTACATTCAAAAGCCAAAGAGTAGGCTAGCGCCG
TCTGTAATACGTCTGTTGCGAATTGAGAAGCTCCGTGGATCATTGCATTG
AAAACCTGTTATCACTAATGGTTAGCGTGACATCAGTATGACGTTATCTC
AGAATCGTTGGTGCGTGATCAGACACACTTATGTATAACGTACACGAGGA
TGTTAATNTGAATAGACGTGTATATTGTATATTAGATGACATCAGCAATG
ATATAACTTAACGCGACACGGATTGTGAGGCCTTCTATTCTGTCAGAATG
CGCGCGGCATAGTTTCCAACTANTAGACAACTTTATTGTTGCGAGGCCGA
TACACCGAACTTGTATGTACCACTTGTAATACAATACGCTAAGACGAATG
ACTTGGATACATGTCGTGGTTAGCAAAGTGTTTATATCACTTATATCTAT
GTTGATTGAGATCTATACTACACATGATGTATTCGCAGATACACTGCATC
ATTATATCATCAAGACACTGTATACGATCTAACACCTACGTAGCCTTGAT
GAGAAGCCGTATCGTTTAGATAAAATACACCAGACCGTACCTCTAACACT
ACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_k20.b1 MSMg01no471_k20.b1 CHROMAT_FILE:
MSMg01no471_k20.b1 PHD_FILE: MSMg01no471_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:00 2005
         (587 letters)



>mm_chrY_1655643_1656625
          Length = 983

 Score =  472 bits (244), Expect = e-137
 Identities = 490/580 (84%), Gaps = 33/580 (5%)
 Strand = Plus / Plus

                                                                       
Query: 4   tcttcaatctgtctcaccaatcatacattaggtccaatg-cttgggtgctttctgtttca 62
           |||||||  ||||||| |||| || |||||||||||||| | |  ||||| || | ||||
Sbjct: 204 tcttcaaagtgtctcagcaattatgcattaggtccaatgtc-tcagtgctctcagcttca 262

                                                                       
Query: 63  ggctcacaatgatcaatggtatatacttt-ctaggttgtataactgcacttca-tttctc 120
           |||||||   ||| |||||| |||| ||| |||  ||||||||||||||| || ||| ||
Sbjct: 263 ggctcac---gattaatggtttata-tttgctaccttgtataactgcactacagttt-tc 317

                                                                       
Query: 121 ta-caggaacctttcctcagattctgtcctcatcaagaatcccat-ctaataccatcaga 178
           || | |||| ||| |||||||| ||||||||| |||| ||  ||| | || |||||||||
Sbjct: 318 tacctggaaacttgcctcagatcctgtcctcagcaaggat--catgc-aacaccatcaga 374

                                                                       
Query: 179 tacttctatgc-atcagagggaacaaggtctagctgtgtgccttgcaggttgggtagagc 237
            | |||||||| | |||||||||||| ||||||||||||||| ||||| |||| ||||||
Sbjct: 375 aaattctatgcta-cagagggaacaaagtctagctgtgtgccatgcagtttggttagagc 433

                                                                       
Query: 238 actgtcaatatcccttctcctccagcaaaccctctcaag-gctcacaacggttgtcttcc 296
           ||||||||||||||||||||||||||||||||||||||  |||||||| | |||||||||
Sbjct: 434 actgtcaatatcccttctcctccagcaaaccctctcaaatgctcacaaagtttgtcttcc 493

                                                                       
Query: 297 agaata-aaatctgattgcctaagagaaggagcaaatcatctctgcttgctctaatgtct 355
           |  | | |||||||| ||||||| |||||||||||| ||||||  ||||||| ||| |||
Sbjct: 494 a--agacaaatctgagtgcctaaaagaaggagcaaagcatctccacttgctccaatatct 551

                                                                       
Query: 356 aaatgacattgcagattaagaaaaaacatggagc--ttccctaagattctcagtcc-gga 412
           ||||| ||||||||||||||||||  | |  |||  ||||| |||||||||||||| |||
Sbjct: 552 aaatgccattgcagattaagaaaatccct--agcagttccccaagattctcagtccagga 609

                                                                       
Query: 413 agcatttggacaatccattactttcatagggtccaaaattgtttgaattctacagaccaa 472
            |||||||| ||||| ||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 610 -gcatttgggcaatctattactttcatagggtccaaacttgtttgaattctgcagaccaa 668

                                                                       
Query: 473 tgaattgtcccattagaagccaactttccagcaggtagcagcagctccaactgttgtctc 532
           || ||||| ||||||||||||||||  ||||||||||||||| |||||||||| ||||||
Sbjct: 669 tgcattgttccattagaagccaactcaccagcaggtagcagctgctccaactgctgtctc 728

                                                   
Query: 533 caaaggcagttaaacaaaagcaacctgaagaggcaggtga 572
           ||| ||||  ||||||||||||       |||||||||||
Sbjct: 729 caatggcacctaaacaaaagca-------gaggcaggtga 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 983
Length adjustment: 10
Effective length of query: 577
Effective length of database: 973
Effective search space:   561421
Effective search space used:   561421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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