Query= MSMg01no480_g07.b1 MSMg01no480_g07.b1 CHROMAT_FILE:
MSMg01no480_g07.b1 PHD_FILE: MSMg01no480_g07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:41 2005
(373 letters)
>mm_chrY_2477654_2478426
Length = 773
Score = 197 bits (102), Expect = 7e-55
Identities = 277/338 (81%), Gaps = 15/338 (4%)
Strand = Plus / Minus
Query: 7 gaatgtattatgagcttgtcaagggcattttaatatgaa-tttctttcctgttatgttta 65
|||| ||||||||| ||| ||||| ||||| || |||| |||||||| |||||| |||
Sbjct: 616 gaatatattatgagattgccaaggacatttggatgtgaattttctttcttgttatactta 557
Query: 66 tttttcc-ttggtgatttgaagt-cgaagctgctcaaatgaaaaaaaaaaagaggtatct 123
|||||| || ||| ||||||| | ||||| | || | | | || ||||| ||| |
Sbjct: 556 -ttttccttttctgacttgaagtgc-aagctac-caca-g----acaacaagagttatat 505
Query: 124 aaaactacttctcattatctcactttctttaaattgagatttctgatgttgaggaggaat 183
||||||| ||||||||||||| || ||| |||||||| |||||| | ||||| |||||||
Sbjct: 504 aaaactatttctcattatctccctctctgtaaattgacatttctaaagttgaagaggaat 445
Query: 184 gaagtgagtgtgcagattttgtccacataattcctaaaagaaagagcaatagtcatgttc 243
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 444 gaagtgagtgtgcagattttgtccacatacttcctaaaagaaggagcaatagtcatgttc 385
Query: 244 tttatacacctgtattc-gacaccccaattaaattgcatgggtactggctgaatctaaag 302
| |||| ||||| | |||| ||||| |||||||| |||| |||||| ||| |||
Sbjct: 384 cacaaacacatgtat-cagacataccaatgaaattgcaggggtcctggctaaatagaaaa 326
Query: 303 tccctgtaaatga--atgtgtttgtgtgtgtgtgtgtg 338
|||||||||||| || ||||||||||||||| ||||
Sbjct: 325 cccctgtaaatgaggatttgtttgtgtgtgtgtctgtg 288
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space: 278096
Effective search space used: 278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no480_g07.g1 MSMg01no480_g07.g1 CHROMAT_FILE:
MSMg01no480_g07.g1 PHD_FILE: MSMg01no480_g07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:41 2005
(571 letters)
>mm_chrY_1310769_1311740
Length = 972
Score = 340 bits (176), Expect = 1e-97
Identities = 357/432 (82%), Gaps = 39/432 (9%)
Strand = Plus / Minus
Query: 164 atttaaaataaagaaggatcaggggatatggcccagag--acaatgccatgtgtgtgttc 221
||||||||||||||| || | | ||| ||||||||| | | |||| ||| ||| ||
Sbjct: 972 atttaaaataaagaaagacctgtggagatggcccaggggta----gccaagtgagtgatc 917
Query: 222 aaacattcacctacaacaccagtgcttatgattttgggaggggcagagataggaagatga 281
|||||||||||||||| ||||||||| || | |||||||||||||| ||||||||||
Sbjct: 916 ccacattcacctacaacaacagtgcttagga--tggggaggggcagagacaggaagatga 859
Query: 282 ctgtggcttcctgaaagcc------------agctcagcaagaaacccagtcacaagggg 329
||||||||||||||||||| |||||||||||| ||| ||||||| |||
Sbjct: 858 ctgtggcttcctgaaagccagccccactcctagctcagcaagagacctggtcacaa-ggg 800
Query: 330 a-taagtcatgta-gga---aaagagtagatcacactatacccttccctagcctctgaac 384
| ||| || || ||| || ||| ||| ||||| |||||||||||||||||||||||
Sbjct: 799 agtaa---at-tagggagtgaaggagcagagcacacaatacccttccctagcctctgaac 744
Query: 385 ttacctgtacagttctctatgcagactcacataaatatgattaaa--atatgcaagaggt 442
|||||||||||| ||| |||||| || |||||||||||||||||| |||| |||||||
Sbjct: 743 ttacctgtacaggtctgtatgcatacacacataaatatgattaaagtatat--aagaggt 686
Query: 443 tattttgcatagcttatattcaaaagcaatgttgttttagactagaaacctgaggacttt 502
||| |||||||| |||||| ||||||||||||||| |||| |||| |||||||||||||
Sbjct: 685 tatgttgcatagattatatgcaaaagcaatgttgtcttagcctagggacctgaggacttt 626
Query: 503 -atatcattat-agttcctggagcaaactcccaagatatagatga-tgggtatatcttct 559
||||||||| ||| |||||||||||||||| ||||||||| || |||||||| |||||
Sbjct: 625 tatatcattaggagt-cctggagcaaactccccagatataga-gaatgggtataccttct 568
Query: 560 tactgtgcaaag 571
||||||||||||
Sbjct: 567 tactgtgcaaag 556
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 972
Length adjustment: 10
Effective length of query: 561
Effective length of database: 962
Effective search space: 539682
Effective search space used: 539682
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
