BAC Information

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BAC

Clone NameMSMg01-483H14
ChromosomeY (Build37)
Map Location 1,655,831 - 1,656,392
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143
Downstream geneLOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483H14.T7 (MSMg01no483_h14.b1)MSMg01-483H14.TJ (MSMg01no483_h14.g1)
ACCAG563394AG563395
length780779
length of high quality
(start - end)		561 (71 - 631)575 (79 - 653)
definitionCHROMAT_FILE: MSMg01no483_h14.b1 PHD_FILE: MSMg01no483_h14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:41 2005CHROMAT_FILE: MSMg01no483_h14.g1 PHD_FILE: MSMg01no483_h14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:41 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNC
GCGGAATTCTCACCTTACGAATACCGAATGACAGAGAAGCACCTGAAAAA
AAAAATGTCCAACATCCTTAATCATCAGAGAATTGCAAATCAAAACAACC
CTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGG
TGACAGCAGATGCTGGCATGGATGTGGAGAAAGAGGAACACTCCTCCATT
GTTGGTGGGATGGCAGGCTTATACAACCACTCTGGAAATCAGTCTGGCAG
TTCATCAGAAAATTGTACATAGTAATACCGGAGGATCCAGCAATACATCT
CCTGGGCATATATCCAGAAGATACCCCAACTGGTAAGAAGGACACATGCT
CCACTATGTTCATAGCATCCTTATTTATAATAGCCAGGGCTGGAAAGAAC
CCAGATGCCCCTCAACAGAGAAATGGATACAGAAAATATGGTACATCTAC
ACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCT
AGCCAAATGGATGGACCTGGAATGCATCATCCTGAGTGAGGTAACACATT
CACAAAGTAACTCACACAATATGTACTCACTGATAAGTGGATATTAACCC
AAAACCTAGGATACCTAAGATATAAGATACNATTTTCTAAACACATGAAG
CTCAAGAAAATGANGACTGGAGTGTGGACACTATGCCCCCTCTTAGAAGT
GGGAACAAACTCTCCTGGGAAGAGGTACAG

NNCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAACAAACAAAATCTCTTCAA
TCTGTCTCACCAATCATACATTAGGTCCAATGCTTGGGTGCTTTCTGTTT
CAGGCTCACAATGATCAATGGTATATACTTTCTAGGTTGTATAACTGCAC
TTCATTTCTCTACCAGGAACCTTTCCTCAGATTCTGTCCTCATCAAGAAT
CCCATCTAATACCATCAGACACTTCTATGCATCAGAGGGAACAAGGTCTA
GCTGTGTGCCTTGCAGGTTGGGTAGAGCACTGTCAATATCCCTTCTCCTC
CAGCAAACCCTCTCAAGGCTCACAACGGTTGTCTTCCAGAATAAAATCTG
ATTGCCTAAGAGAAGGAGCAAATCATCTCTGCTTGCTCTAATGTCTAAAT
GACATTACAGATTAAGAAAAAACCTAGAGCTTCCCTAAGATTCTCAGTCC
GGGAGCATTTGGACAATCCATTACTTTCATAGGGTCCAAAATTGTTTGAA
TTCTACAGACCAATTAATTGTCCCATTAGAAGCCAACTTTCCAGCAGGTA
GCAGCAGCTCCAACTGTTGTCTCCAAAGGCAGTTAAACAAAAGCAACCTG
AAGAGGCAGGTGAACTGCTCCTGGTCCCACAAGGTGACTTTGGTTTCTGG
TGGGAGGGGGCAATACATGCTGTGAGACTCTGTTCTGTTGAGTGCTCACC
CACAAACACTCCTCTTGGAAAGACAGGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_h14.g1 MSMg01no483_h14.g1 CHROMAT_FILE:
MSMg01no483_h14.g1 PHD_FILE: MSMg01no483_h14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:41 2005
         (575 letters)



>mm_chrY_1655631_1656600
          Length = 970

 Score =  501 bits (259), Expect = e-146
 Identities = 494/575 (85%), Gaps = 21/575 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaacaaacaaaatctcttcaatctgtctcaccaatcatacattaggtccaatg-cttgg 59
           |||||||||||||| |||||||  ||||||| |||| || |||||||||||||| | |  
Sbjct: 201 aaaacaaacaaaatgtcttcaaagtgtctcagcaattatgcattaggtccaatgtc-tca 259

                                                                       
Query: 60  gtgctttctgtttcaggctcacaatgatcaatggtatatacttt-ctaggttgtataact 118
           ||||| || | |||||||||||   ||| |||||| |||| ||| |||  ||||||||||
Sbjct: 260 gtgctctcagcttcaggctcac---gattaatggtttata-tttgctaccttgtataact 315

                                                                       
Query: 119 gcacttca-tttctctaccaggaacctttcctcagattctgtcctcatcaagaatcccat 177
           ||||| || ||| |||||| |||| ||| |||||||| ||||||||| |||| ||  |||
Sbjct: 316 gcactacagttt-tctacctggaaacttgcctcagatcctgtcctcagcaaggat--cat 372

                                                                       
Query: 178 -ctaataccatcagacacttctatgc-atcagagggaacaaggtctagctgtgtgccttg 235
            | || ||||||||| | |||||||| | |||||||||||| ||||||||||||||| ||
Sbjct: 373 gc-aacaccatcagaaaattctatgcta-cagagggaacaaagtctagctgtgtgccatg 430

                                                                       
Query: 236 caggttgggtagagcactgtcaatatcccttctcctccagcaaaccctctcaag-gctca 294
           ||| |||| ||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 431 cagtttggttagagcactgtcaatatcccttctcctccagcaaaccctctcaaatgctca 490

                                                                       
Query: 295 caacggttgtcttccagaata-aaatctgattgcctaagagaaggagcaaatcatctctg 353
           ||| | ||||||||||  | | |||||||| ||||||| |||||||||||| ||||||  
Sbjct: 491 caaagtttgtcttcca--agacaaatctgagtgcctaaaagaaggagcaaagcatctcca 548

                                                                       
Query: 354 cttgctctaatgtctaaatgacattacagattaagaaaaaacctag-agcttccctaaga 412
           ||||||| ||| |||||||| |||| |||||||||||||  ||||| || ||||| ||||
Sbjct: 549 cttgctccaatatctaaatgccattgcagattaagaaaatccctagcag-ttccccaaga 607

                                                                       
Query: 413 ttctcagtccgggagcatttggacaatccattactttcatagggtccaaaattgtttgaa 472
           |||||||||| ||||||||||| ||||| ||||||||||||||||||||| |||||||||
Sbjct: 608 ttctcagtccaggagcatttgggcaatctattactttcatagggtccaaacttgtttgaa 667

                                                                       
Query: 473 ttctacagaccaattaattgtcccattagaagccaactttccagcaggtagcagcagctc 532
           |||| |||||||||  ||||| ||||||||||||||||  ||||||||||||||| ||||
Sbjct: 668 ttctgcagaccaatgcattgttccattagaagccaactcaccagcaggtagcagctgctc 727

                                              
Query: 533 caactgttgtctccaaaggcagttaaacaaaagca 567
           |||||| ||||||||| ||||  ||||||||||||
Sbjct: 728 caactgctgtctccaatggcacctaaacaaaagca 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 970
Length adjustment: 10
Effective length of query: 565
Effective length of database: 960
Effective search space:   542400
Effective search space used:   542400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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