BAC Information

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BAC

Clone NameMSMg01-485G08
ChromosomeY (Build37)
Map Location 1,700,089 - 1,700,347
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401
Downstream geneLOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485G08.T7 (MSMg01no485_g08.b1)MSMg01-485G08.TJ (MSMg01no485_g08.g1)
ACCAG564850AG564851
length738732
length of high quality
(start - end)
525 (84 - 608)519 (76 - 594)
definitionCHROMAT_FILE: MSMg01no485_g08.b1 PHD_FILE: MSMg01no485_g08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:19 2005CHROMAT_FILE: MSMg01no485_g08.g1 PHD_FILE: MSMg01no485_g08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:20 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NAAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGAAGAT
GGGCGGAATTCTCCCAAATTACCGACCACCAAACAGGAAGCATATACCAA
CTATTAGATTATCCCCAAAATATACACTGAAAAAAAATTTGATCTCTGTT
CAATCAGAGATGATGCACTGAGGTCTCAAGAGGCTAGAGGCCCCTGGGTG
TTTAGAGATCAGGTGGCTTGGGGACATGCTCTTGGATACAGTGGATGGTC
AGTAGATATGGGATGTGTAATAATAAGAAGGTGGACAGGGTTGAGTGAAT
GAATGAATGAATTAAAATAGAATAATGTTTTGTAATCACATCCCCTATAC
TCCAAATCTGGAATCCGAATTAAGGAAACTCACATTCTCTTTAATAGTTG
TGTAGTACTCCATTGTGTAAATGTAACACATTTTCTGTATCCATTCCTCT
GTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAGGGC
TGCTATGAACATAGTGGAGCATATGTCCTTTTTACCGGCTGGGACATCTT
CTGGATATATGCCCAGAAGAGGTATTGCTGGATCTTCTGGTGGTAATATG
TCTAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTACAAG
CTTTGCATCCCACCAACAATGTAAGAGTGTTCCTCTTTCTCCACATCCTC
CACAGCATCTGCTGTCACCTGAATTATTCATCTTAGCC
CGGACAATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTTCTCTCAAACACCTATTTATC
AGGAAAACTGTCAGTGAGAATGGCTGAGACATCTAGTCTGGGCGAGTTTC
CCATGATTAAGGGCAGGGAATATGAAGATAAGGCCAACTTATTAATATAC
TTCCAAAGTCTAGTTTTAATTGGCATCTCTAATGCTGTGCAGAAGAAATG
TGAGATTGTGAGGTGACTTCACAGATTAATATAAGAGGTGAGTCTAGAAA
ATCAGGAGCTGTCTATTGAGAACAGCACTGGACCATGGCCCTCCTTTGAG
GATTTACACTTTAAAGCTGAGATAAACTGTAAAAAAATTATGTCTTTCTG
AAATTTATGCCATGGAACGTCCACATAATATCTTAGTTCATTTGTGTGAT
GTTTTTATACATGGCTGTAAATGCTTTTATGTTAACCTGTGTGTGCTAGT
AAGTGTTTGCCTTCTTAACATGAAGCTAAAGTCACCTGGGAAGAGGGAAC
CTCAAATTGGATCTGTCTACATTAGATGAGGCTATAGCCATGTTTATTTG
TTTTCTTAGAAATTTTTCTTTAAATTTTCCATCTTATGTGACCTGAAAGG
ATCCATCTCCCTGTTTATCCTCCTACCATCGAACTCTGAGACACAGTGAA
ACTAACAGAAGTTATGGGCCAAATGAATTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_g08.g1 MSMg01no485_g08.g1 CHROMAT_FILE:
MSMg01no485_g08.g1 PHD_FILE: MSMg01no485_g08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:20 2005
         (519 letters)



>mm_chrY_1699889_1700808
          Length = 920

 Score =  201 bits (104), Expect = 8e-56
 Identities = 225/266 (84%), Gaps = 15/266 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttctctcaaac-acctatttatcaggaaaactgtcagtgagaatggctgagacatct 59
           |||||||||| ||| | || |||| ||| ||||||||||||||||||||||| |||||||
Sbjct: 201 tctttctctc-aactagctgtttaccagtaaaactgtcagtgagaatggctgtgacatct 259

                                                                       
Query: 60  agtctgggcgagtttcccatgattaagggcagggaatatgaagataaggcc-aacttatt 118
           ||| |||| ||| |||||||||||||||||||||||||||||||||||||  || |||||
Sbjct: 260 agtatgggtgaggttcccatgattaagggcagggaatatgaagataaggcagaa-ttatt 318

                                                                       
Query: 119 aatatac-ttccaa-ag-tctagt-tttaattggcatctctaatgctgtgcagaagaaat 174
           ||||||  ||  || || |||| | |||||||||||| |||| ||||||||| |||||| 
Sbjct: 319 aatatatatt--aagaggtcta-tctttaattggcatttctattgctgtgcacaagaaac 375

                                                                       
Query: 175 -gtgagattgtgaggtgacttcacagattaatataagaggtg-agtctagaaaatcagga 232
            | |||||| |||  |||||||| ||| ||| ||| || ||  | ||||||||||  |||
Sbjct: 376 ag-gagattatgaaatgacttcaaagagtaacatatgacgtcca-tctagaaaattggga 433

                                     
Query: 233 gctgtctattgagaacagcactggac 258
           | ||||||||||||||||||||||||
Sbjct: 434 gatgtctattgagaacagcactggac 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 920
Length adjustment: 10
Effective length of query: 509
Effective length of database: 910
Effective search space:   463190
Effective search space used:   463190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)