Query= MSMg01no485_h05.b1 MSMg01no485_h05.b1 CHROMAT_FILE:
MSMg01no485_h05.b1 PHD_FILE: MSMg01no485_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:24 2005
(659 letters)
>mm_chrX_53200192_53201252
Length = 1061
Score = 658 bits (340), Expect = 0.0
Identities = 569/648 (87%), Gaps = 23/648 (3%)
Strand = Plus / Minus
Query: 22 tgttaaaataaaataaaacaataacaaaaagcaatctgactttctccagcccctctatgg 81
|||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 697 tgttaagataaaataaaagaataacaaaaagcaatctgactttctccagctcctctacgg 638
Query: 82 tccagtagcctccttggctatttaa--caccaacaaaccactagtaaacactagtgttgg 139
|||||| || |||||||||| |||| || ||||| ||| || ||| |||||||||||
Sbjct: 637 tccagttgcttccttggctacttaatgca--gacaaatcacaagaaaatactagtgttgg 580
Query: 140 gcagatttgtgtgttgctgtaaagctgccttgatcatttgcttt--cttgggtgttatcc 197
||| ||| |||||||||| |||||||| ||||||||||| ||| |||||||| |||||
Sbjct: 579 gcacattggtgtgttgctctaaagctgtcttgatcattt--ttttccttgggtgctatcc 522
Query: 198 ttcatgaagttatttctctcttttccttctctgtaaaatatataag-act-aagcttaaa 255
|||||||||| ||||||||||||||||||||||||||| ||| ||| ||| || | ||||
Sbjct: 521 ttcatgaagtgatttctctcttttccttctctgtaaaagata-aagcactgaa-cctaaa 464
Query: 256 agcattttctgaagtgatacatgagtcccaccctctctatataagatctggttaccatga 315
||||||||||| || ||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 463 agcattttctggagagatacatgagttccaccctctctctataagatccagttaccatga 404
Query: 316 gtcagccaaaataaactctgcctgacattcttaggtat-gattctgaaag-aggtgtttt 373
| ||||||||||||||||||||||| |||||||||| | ||||||||||| ||||| |||
Sbjct: 403 gacagccaaaataaactctgcctgagattcttaggt-tggattctgaaagcaggtggttt 345
Query: 374 ctgttgtcactggg-gtgtcacttatttccccattcactagcagcacctagaacatggca 432
|||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 344 ctgttgtcactgggagtgtcacttagttctccattcactagcagcacctagaacatggca 285
Query: 433 ctagggtacaaaggccagtggaagtcctcctctctcaactcatggatgtattttcataaa 492
||||| |||| |||| |||||||| |||| ||||||||||||||||||| |||| | |||
Sbjct: 284 ctaggttacacaggcgagtggaaggcctcatctctcaactcatggatgtgtttttaaaaa 225
Query: 493 aag-atattaataccagcatctatac-c-acctctagagaacatgaatgctagcctaggc 549
||| ||| || | ||| |||||| || | ||||||||||||||| ||||| |||| | ||
Sbjct: 224 aaggatactagttccaacatctagactctacctctagagaacataaatgccagcccaagc 165
Query: 550 tcctatacct-aacaaaactctcaatcatcatagacgttgaaaacaatatattccacgac 608
|||||||| | ||||||||||||||||| |||||| | ||||||||||||||||| |||
Sbjct: 164 tcctatac-tgaacaaaactctcaatcaccatagatggagaaaacaatatattccatgac 106
Query: 609 aaagccaattttacacataatctttccttaaatcc-acccctacaaag 655
||| ||||||||||||||||||||||| |||| || |||| |||||||
Sbjct: 105 aaaaccaattttacacataatctttccataaagcccaccc-tacaaag 59
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1061
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1051
Effective search space: 682099
Effective search space used: 682099
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_h05.g1 MSMg01no485_h05.g1 CHROMAT_FILE:
MSMg01no485_h05.g1 PHD_FILE: MSMg01no485_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:24 2005
(593 letters)
>mm_chrY_1309655_1310647
Length = 993
Score = 209 bits (108), Expect = 5e-58
Identities = 199/234 (85%), Gaps = 17/234 (7%)
Strand = Plus / Minus
Query: 319 tttacatactttagttgtttgaaaaattgtggcccacagaagctcaaatattcaaaggtg 378
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 677 tttacatactttagtagtttgaataattgtggcccacagaagctcaaatattcaaatgtg 618
Query: 379 ttagttttccaggtggt-gagatg-ttaagaaagaattaggatttgtatttttattaaag 436
||||||||||||||| | | | || ||| ||||||||||| | |||| ||||||||||||
Sbjct: 617 ttagttttccaggtgtttg-gctgatta-gaaagaattagaagttgtgtttttattaaag 560
Query: 437 gagatttgtcactatt---ctttgaaatatcaaaaatccatcaggctctctctctctcat 493
||||||||||| || | |||||||||||||| ||||||| |||||||||||||
Sbjct: 559 gagatttgtca---ttgggccttgaaatatcaaaagcccatcagtctctctctctctc-- 505
Query: 494 tcttactctctcctcattctctctgtctctgtctctttgtctctgtctctgtct 547
||| ||||||| || ||||||| ||||| ||||| | |||||| | ||||||
Sbjct: 504 tct--ctctctc-tc--tctctctctctctctctctctctctctgcccctgtct 456
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
