BAC Information

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BAC

Clone NameMSMg01-485K02
ChromosomeY (Build37)
Map Location 2,635,279 - 2,635,693
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
Downstream geneLOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485K02.T7 (MSMg01no485_k02.b1)MSMg01-485K02.TJ (MSMg01no485_k02.g1)
ACCAG565029AG565030
length736739
length of high quality
(start - end)		567 (53 - 619)415 (78 - 492)
definitionCHROMAT_FILE: MSMg01no485_k02.b1 PHD_FILE: MSMg01no485_k02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:38 2005CHROMAT_FILE: MSMg01no485_k02.g1 PHD_FILE: MSMg01no485_k02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGGGNGGCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGTTCCCCTTACAAAGACATAGACTGACAGACTTGCTA
CAAAAACAGGACCCAATAGTCTGCTGTTTACAGGAAACCCATATCAGGGA
AAAAGACAGACACTATCTCAGAGTGAAAGGCTGGAAAATAATTTTCCAAG
CAAATGGTCTGAAGAAATCAGCTGGAGTAACCATTCAAATATCGATTAAA
ATTGATTTCCAAACTAAAGTTATCAAAAAAGACAAAGAAGGACACTTCAT
ACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCT
ATGCTCCAAATGCAAGGGCAGTCCCATTCATTAAAGAAAGCTCAAAGCAC
ACATTGCAGCTCACACAATAATAGTGGGAGGCTTCAACAAACCACTTTTA
TCAATGGACAAATCTTGGAAACAGAAACTAAACAGGGACACAGTGAAACT
AACAGAAGTTATTAAACAAATGGACTTCATAGATATCTACAGAACGTTTT
ATCTTGAAACAAAAGGATATAACTTCTTCTCAGCACATCATGGTACCTTT
TCCAAATTTGACCATATAATTGGTCATAAAACAGGCCTCAACTGATAAAA
AATATTGCAATTGTCCAAAGCATGCTATCAGACCACCAAGGACTAAGGCT
GATTGATCNTCCATAACAACATAAATTATGGAAAGC

AGGGGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCGGTGCACCAGTGTCCTTCT
ATGACATATTTGTCTAACAGATGCACATCTGTATATATGTATGACAGGCA
TATGATTATATGTGATATATATATGGATATATATTTGTGTGTGTGCATAA
ATATGTATGTGATATATGTATGTGTGTATATGTATATATGAAGGTTTCTT
CAACATGCTTAAGTAGCATGGACTGCGAAAAAAATGCTGAAACTGCACTA
GCAATACTTTCCATTACATATGAATTATGGTGTGAAGTCACCAGTGGACA
AGTATGCCAACATAGAGCACAAAATAGCCATCAGAAAACTATGGCCTTTT
CACACTTAAAGATACTTTGGAGATGACTTTGCCTTAATTACCCTGTGTTT
ATCTACATTCTCAATTGTGTCTCTAGATATTTTTGATCAGTACTGGAAGG
TACTGTGAATTCTTAACTGTTCTTTAAATTACTTTTGCCCTCATGTGTGA
TGGTTTGCACATTTCTTGGGCCATGGAGTGGCCACCATTTGGAGGTGTGG
CCCTTGTTGGAATAGAAAATATCCGGGTTGGAATAAAGGGTGTCACTGTG
GCATGTTGGGCTTTAAAACCCCTCCCCCCCAGTTGCCTTCAATGGCCAAC
CTTCCCCCAATCACCCCTTTGGGATTGATAAAATTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_k02.g1 MSMg01no485_k02.g1 CHROMAT_FILE:
MSMg01no485_k02.g1 PHD_FILE: MSMg01no485_k02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:39 2005
         (415 letters)



>mm_chrY_2635079_2635893
          Length = 815

 Score =  795 bits (411), Expect = 0.0
 Identities = 414/415 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgcggtgcaccagtgtccttctatgacatatttgtctaacagatgcacatctgtatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcggtgcaccagtgtccttctatgacatatttgtctaacagatgcacatctgtatata 260

                                                                       
Query: 61  tgtatgacaggcatatgattatatgtgatatatatatggatatatatttgtgtgtgtgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtatgacaggcatatgattatatgtgatatatatatggatatatatttgtgtgtgtgca 320

                                                                       
Query: 121 taaatatgtatgtgatatatgtatgtgtgtatatgtatatatgaaggtttcttcaacatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaatatgtatgtgatatatgtatgtgtgtatatgtatatatgaaggtttcttcaacatg 380

                                                                       
Query: 181 cttaagtagcatggactgcgaaaaaaatgctgaaactgcactagcaatactttccattac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttaagtagcatggactgcgaaaaaaatgctgaaactgcactagcaatactttccattac 440

                                                                       
Query: 241 atatgaattatggtgtgaagtcaccagtggacaagtatgccaacatagagcacaaaatag 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatgaattagggtgtgaagtcaccagtggacaagtatgccaacatagagcacaaaatag 500

                                                                       
Query: 301 ccatcagaaaactatggccttttcacacttaaagatactttggagatgactttgccttaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccatcagaaaactatggccttttcacacttaaagatactttggagatgactttgccttaa 560

                                                                  
Query: 361 ttaccctgtgtttatctacattctcaattgtgtctctagatatttttgatcagta 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaccctgtgtttatctacattctcaattgtgtctctagatatttttgatcagta 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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