Query= MSMg01no491_g03.b1 MSMg01no491_g03.b1 CHROMAT_FILE:
MSMg01no491_g03.b1 PHD_FILE: MSMg01no491_g03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:17 2005
(249 letters)
>mm_chrY_2780286_2780934
Length = 649
Score = 418 bits (216), Expect = e-121
Identities = 240/248 (96%), Gaps = 1/248 (0%)
Strand = Plus / Plus
Query: 1 ggttgggagtgaatgctggaccaagactcttctctaagagaacttctgagcatgtgaaga 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ggttgggagtgaatgctggaccaagactcttctctaagagaacttctgagcaggtgaaga 260
Query: 61 agactatgctaaacagatttgagctcataaaattaattttataaaaataagaagttaata 120
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 agactatgctaaacagttttgagctcctaaaattaattttataaaaataagaagttaata 320
Query: 121 agtcagccatggtggtacacacatttaatcccagaactcagaaggcaa-ggacaggcata 179
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
Sbjct: 321 agtcagccatggtggtacacacatttaatcccagaactcagaaggcaaaggataggcaga 380
Query: 180 tttctaaattagagaccagcctggcctacaaagtgagttccagggaagccagtgctatag 239
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 381 tttctaaattagagaccagcctggtctacaaagtgagttccagggcagccagtgctatag 440
Query: 240 agaggaac 247
||||||||
Sbjct: 441 agaggaac 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no491_g03.g1 MSMg01no491_g03.g1 CHROMAT_FILE:
MSMg01no491_g03.g1 PHD_FILE: MSMg01no491_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:17 2005
(582 letters)
>mm_chrY_1655632_1656608
Length = 977
Score = 480 bits (248), Expect = e-139
Identities = 490/572 (85%), Gaps = 17/572 (2%)
Strand = Plus / Plus
Query: 1 aaacaaacaaaatctcttcaatctgtctcaccaatcatacattaggtccaatg-cttggg 59
||||||||||||| ||||||| ||||||| |||| || |||||||||||||| || |
Sbjct: 201 aaacaaacaaaatgtcttcaaagtgtctcagcaattatgcattaggtccaatgtctcag- 259
Query: 60 tgctttctgtttcaggctcacgatgatcaatggtatatacttt-ctaggttgtataactg 118
|||| || | |||||||||||||| | |||||| |||| ||| ||| |||||||||||
Sbjct: 260 tgctctcagcttcaggctcacgat--t-aatggtttata-tttgctaccttgtataactg 315
Query: 119 cacttca-tttctctaccaggatcctttcctcagattctgtcctcatcaagaatcccatt 177
|||| || ||| |||||| ||| ||| |||||||| ||||||||| |||| ||| ||
Sbjct: 316 cactacagttt-tctacctggaaacttgcctcagatcctgtcctcagcaaggatc--atg 372
Query: 178 taataccatcagacacttctatgcat-cagagggaacaaggactagctgtgtgccttgca 236
|| ||||||||| | |||||||| | |||||||||||| | ||||||||||||| ||||
Sbjct: 373 caacaccatcagaaaattctatgc-tacagagggaacaaagtctagctgtgtgccatgca 431
Query: 237 ggttgggtagagctctttttatatcccttctcctccagcaaaccctctcaag-gctcaca 295
| |||| |||||| || | ||||||||||||||||||||||||||||||| |||||||
Sbjct: 432 gtttggttagagcactgtcaatatcccttctcctccagcaaaccctctcaaatgctcaca 491
Query: 296 acggttgtcttccaggataaaatctgattgcctaagagaaggagcaaatcatctctgctt 355
| | |||||||||| || ||| ||||| ||||||| |||||||||||| |||||| |||
Sbjct: 492 aagtttgtcttccaagacaaa-tctgagtgcctaaaagaaggagcaaagcatctccactt 550
Query: 356 gctctaatgtctaaatgacattgcagattaagaaaaaacctag-agcttccctaagattc 414
|||| ||| |||||||| |||||||||||||||||| ||||| || ||||| |||||||
Sbjct: 551 gctccaatatctaaatgccattgcagattaagaaaatccctagcag-ttccccaagattc 609
Query: 415 tcagtccgggagcatttggacaatccattactttcatagggtccaaaattgtttgaattc 474
||||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 610 tcagtccaggagcatttgggcaatctattactttcatagggtccaaacttgtttgaattc 669
Query: 475 tacagaccaatgaattgtcccattagaagccaactttccagcaggtagcagcagctccaa 534
| |||||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||
Sbjct: 670 tgcagaccaatgcattgttccattagaagccaactcaccagcaggtagcagctgctccaa 729
Query: 535 ctgctgtctccaaaggcagttaaacaaaagca 566
||||||||||||| |||| ||||||||||||
Sbjct: 730 ctgctgtctccaatggcacctaaacaaaagca 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 977
Length adjustment: 10
Effective length of query: 572
Effective length of database: 967
Effective search space: 553124
Effective search space used: 553124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
