BAC Information

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BAC

Clone NameMSMg01-493K24
ChromosomeY (Build37)
Map Location 1,791,907 - 1,792,467
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137
Downstream geneLOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493K24.T7 (MSMg01no493_k24.b1)MSMg01-493K24.TJ (MSMg01no493_k24.g1)
ACCAG571146AG571147
length740746
length of high quality
(start - end)		698 (43 - 740)645 (76 - 720)
definitionCHROMAT_FILE: MSMg01no493_k24.b1 PHD_FILE: MSMg01no493_k24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:19 2005CHROMAT_FILE: MSMg01no493_k24.g1 PHD_FILE: MSMg01no493_k24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:19 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGG
AATTCATCCAGTATTCTTTCTCTTCTATTTGGTTAGAGCTGACTCAAACC
TGCAAGGTCCAGGACAGAAAAAATAGACTCCCTCATCCAATTTGGTATGT
GTGTTTCCTGGTAGTGTTACAGATCCTCACATGCTTAGACCACTAAAATA
GAGCACATCTATTCTACCACAGTTACGGAAGGCAACATTGTAAAAATCAA
GGGGCTGGCTAGTTTTCCTAGTTGCTGGCACTGTGGTTGGCAACCTGTAG
GTTGCTAGTACTTGTGACAAATTTCACAGGAGTTGTCCTAGACTATCTGT
ATGTCAGAAATGTATGTTATAATTCATATCAGTAGGACATTTCAGTTATG
AAGCAGCAAAAAATATTTTTACGGTTGGGGCACCACACAGCATAAGGAAG
TATATATATGAAGGAACCGCAGTATTAAAAATGTGGAGAACCACTCTCTG
GAACTTTGAAAACTGAAGCATGGTGTGCCTCCCAGACTGTCTTTGACATG
AGTCTGAGGTATACTTCTGACTCTGATCTTCTTGTTACCTTTTGTTTCTT
GTGATCATATGGGGTTAACCTAGAAAGTATATTCAAATGCCCTATGTGAG
AGCATGTTCAGAATTCATTTTGTGAAGCAATGTGCTCTAGTATATTTAGG
ACAGAGCTGTCTTTGGGACCAGTCCTCTTCTGTATGCCTG

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGAAGCCAGCAGAGTTCGTGGACTG
CAAGCAGGTCTTCTGAAAAAGCAATGCATGATATAATTACCTGAATTTTC
TGGCAGTGCTCTTCAATATTGTGTTCTACGTGATGCAATATTCCACTCTC
TTTCTCTATCTCTGTCTCTGTCTCTGTCCCTCTCTGTCTCTGTCTCTCTC
TGTCTCTTTGTCTCTCTCTCTCTGTCTCTCTGTATCTGTCTCTGTCTCTG
TCTCTGTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTGTCTGTC
TCTCTCAATATCTATTCCTCTAACACTCAGTATGACTAATGATTCTCTTA
TCTTCTCTTCTACAAAGGGGATGATATTTTAATGTCATCTGCAAATTGTT
ATTCTGAATCGGAGTAGGGAAAGGACACTTTAAATCTGTTGTTACACCCA
AGAGCATGGCTTTTAAAACCTGGTGAATCAGTAGAAGATGAGACAATGTA
TAGAAGAGGTTGCTTCTTTTGCTTTGGTTTGGTTTAGCTTTGTTTATTTC
TGTTACACGCAATCATTAGAAGAAACTCTGTGAAATACTGCCTAATGCAA
ATAGGTACCTCAGAACCAAAATTATATTTCTCAGTTACAATATATAATAT
ATATTATTAGAGATTTTTTTTCATTAAACCTTGAACAGAATTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_k24.g1 MSMg01no493_k24.g1 CHROMAT_FILE:
MSMg01no493_k24.g1 PHD_FILE: MSMg01no493_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:19 2005
         (645 letters)



>mm_chrY_1791426_1792470
          Length = 1045

 Score =  439 bits (227), Expect = e-127
 Identities = 423/571 (74%), Gaps = 131/571 (22%)
 Strand = Plus / Minus

                                                                        
Query: 196  tctgtctctctgtatctgtctctgtctctgtctctgtctctctctctctctctctctttc 255
            ||||||||||||  ||||||||  ||||||||    ||||||| ||||||| ||||| ||
Sbjct: 1042 tctgtctctctg--tctgtctc--tctctgtc----tctctctgtctctctgtctctgtc 991

                                                                        
Query: 256  tctctctctctctgtctgtctctctcaatatctattcctctaacactcagtatgactaat 315
            ||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 990  tctctctctctc--tctgtctctctcaatatctactcctctaacactcagtatgactaat 933

                                                                        
Query: 316  gattctcttatcttctcttctacaaaggggatgatattttaatgtcatc----------- 364
            |||||||||||||||||| ||||||||||||||| |||| |||||||||           
Sbjct: 932  gattctcttatcttctctcctacaaaggggatgacatttgaatgtcatctgcaacattca 873

                                                                        
Query: 364  ------------------------------------------------------------ 364
                                                                        
Sbjct: 872  tccacttttctacacaggttgtgctttctcttagcaatcaactaatatcaaagtcacact 813

                                                                        
Query: 365  -----------------------------------tgcaaattgttattctgaatcggag 389
                                               ||||||||||||||||||||| |||
Sbjct: 812  ttcactcagattacaaaataatgtatctgaactcatgcaaattgttattctgaatcagag 753

                                                                        
Query: 390  tagggaaaggacactttaaatctgttgttacacccaagagcatggcttttaaaacctggt 449
            ||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 752  taggggaaggacacttcaaatctgtagttacacccaagagcatggcttttaaaacctggt 693

                                                                        
Query: 450  gaatcagtagaagatgagacaatgtatagaagaggttgcttcttttgctttggtttggtt 509
            |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 692  gaatcagtagaaaatgagacaatgtatagaagaggttgtttcttttgctttggtttggtt 633

                                                                        
Query: 510  tagctttgtttatttctgttacacgcaatcattagaagaaactctgtgaaatactgccta 569
            |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 632  tagctttgtttatttctgttacacgcaatcattagaagaaactctgagaaatactgtcta 573

                                                                        
Query: 570  ------at---------gcaaataggtacctcagaaccaaaattatatttctcagttaca 614
                  ||         |||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 572  gtgcaaatttactgaaggcaaataggtgcctcagaaccaacattatatttctcagttaca 513

                                           
Query: 615  atatataatatatattattagagattttttt 645
            |||||||||||||||||||||||||||||||
Sbjct: 512  atatataatatatattattagagattttttt 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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