Query= MSMg01no499_h10.b1 MSMg01no499_h10.b1 CHROMAT_FILE:
MSMg01no499_h10.b1 PHD_FILE: MSMg01no499_h10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:51 2005
(516 letters)
>mm_chrY_2869443_2870358
Length = 916
Score = 675 bits (349), Expect = 0.0
Identities = 427/477 (89%), Gaps = 44/477 (9%)
Strand = Plus / Minus
Query: 1 cagaagaagtaagaattaaagacatatttgggcaagatgaatagtgaagtagagattaga 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 cagaagaagtaggaattaaagacatatttgggcaagatgaatagtgaagtagagattaga 839
Query: 61 gcaagcagaaaggactgaggagatagctcactgcttaggcccactgattgcttttgcaca 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 acaagcagaaaggactgaggagatagctcactgcttaggcccactgattgcttttgcaca 779
Query: 121 ggaccagggttcaatttctaacacccacatggttgttcacaaccacctgcaattctagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 ggaccagggttcaatttctaacacccacatggttgttcacaaccacctgcaattctagtt 719
Query: 181 ctagacgatctgatgacctctttggacaacacacacacacacagacacacacacacacac 240
|||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 718 ctagacgatctgatgacctctttg-----caca-----------acacacacacacacac 675
Query: 241 acacacacacactctttctcacacacatatactcacccacagagaaaaaaa-tcttttag 299
||| ||||||||||||||||||||||||||||||||| || |||||
Sbjct: 674 aca---------------tcacacacatatactcacccacagagaaaaaaaatcctttag 630
Query: 300 aaaacaattatacaaacaaaaaggagtcaagtatagttttattcccctttaataccagca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aaaacaattatacaaacaaaaaggagtcaagtatagttttattcccctttaataccagca 570
Query: 360 ctcagatgcaggctaaaata-tgtaagttgaatgactgcctagctgataggtgtgttttc 418
|||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ctcagaagcaggctaaac-actgtaagttgaatgactgcctagctgataggtgtgttttc 511
Query: 419 agaattttctttttctttttcttttctttttcttttcttttcttttctttttttttt 475
|||||||| |||||||||| |||||||||||| ||||||||||||||||
Sbjct: 510 agaattttatttttctttt------ctttttcttttc----cttttctttttttttt 464
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_h10.g1 MSMg01no499_h10.g1 CHROMAT_FILE:
MSMg01no499_h10.g1 PHD_FILE: MSMg01no499_h10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:51 2005
(344 letters)
>mm_chrY_1311051_1311795
Length = 745
Score = 275 bits (142), Expect = 3e-78
Identities = 272/330 (82%), Gaps = 36/330 (10%)
Strand = Plus / Minus
Query: 39 acattcacctacaacaccagtgct----actgnnttgggaggggcagagataggaagatg 94
|||||||||||||||| ||||||| | || |||||||||||||| |||||||||
Sbjct: 632 acattcacctacaacaacagtgcttagga-tg----gggaggggcagagacaggaagatg 578
Query: 95 actgtggcttcctgaaagcc------------agctcagcaagaaacccagtcacaaggg 142
|||||||||||||||||||| |||||||||||| ||| ||||||| ||
Sbjct: 577 actgtggcttcctgaaagccagccccactcctagctcagcaagagacctggtcacaa-gg 519
Query: 143 ga-taagttatgtagga---aaagagtagatcacactatacccttccctagcctctgaac 198
|| ||| ||| | ||| || ||| ||| ||||| |||||||||||||||||||||||
Sbjct: 518 gagtaaatta-g--ggagtgaaggagcagagcacacaatacccttccctagcctctgaac 462
Query: 199 ttacctgtacagttctctatgcagactcacataaatatgattaaa--atatgcaagaggt 256
|||||||||||| ||| |||||| || |||||||||||||||||| |||| |||||||
Sbjct: 461 ttacctgtacaggtctgtatgcatacacacataaatatgattaaagtatat--aagaggt 404
Query: 257 tattttgcatagcttatattcaaaagcaatgttgttttagactagaaacctgaggacttt 316
||| |||||||| |||||| ||||||||||||||| |||| |||| |||||||||||||
Sbjct: 403 tatgttgcatagattatatgcaaaagcaatgttgtcttagcctagggacctgaggacttt 344
Query: 317 -atatcattat-agttcctggagcaaactc 344
||||||||| ||| ||||||||||||||
Sbjct: 343 tatatcattaggagt-cctggagcaaactc 315
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 745
Length adjustment: 9
Effective length of query: 335
Effective length of database: 736
Effective search space: 246560
Effective search space used: 246560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
