BAC Information

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BAC

Clone NameMSMg01-502P01
ChromosomeY (Build37)
Map Location 1,311,230 - 1,311,882
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502P01.T7 (MSMg01no502_p01.b1)MSMg01-502P01.TJ (MSMg01no502_p01.g1)
ACCAG578174AG578175
length746745
length of high quality
(start - end)
---665 (78 - 742)
definitionCHROMAT_FILE: MSMg01no502_p01.b1 PHD_FILE: MSMg01no502_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:05 2005CHROMAT_FILE: MSMg01no502_p01.g1 PHD_FILE: MSMg01no502_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:05 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AGGGGAATGAGAGGGAAATAAAATAATTTGAGNANNNGGGGGGAGGGTTT
CCANACTAAAAAAAATGGGGGCGCGGAAACAAATTCCTCAAAGTGTCGAA
AGAATCTCGGGGGAGAACTCCCAAAAAATAAAAACAAAAAAGGGGGGGGA
AAATTTTGGGGGGGGGGGGGCGACCCCGGGGGAAAAAAATTTTTTTTTTT
TTTTTAAAAGGGGGGCCCCCCCCGGGTTTTTTTTTAATAAAAGAAAGGGG
CAGAAAAAATTTTTTTTTTTTTTGTTGGGGGGGGGGCCGCCCTCGGGGGG
GAAAAAAAAAAAAAAAAAAACTTTCTTTTTTTCCTCTATAAATTATAAAA
AAAAGGAAAGAGGGGGGGGGGGGGAAGGAGAAAAGATACTTTTTTTTTTT
TTTTTTTTTTTTTTGCGGGGGAGAAAGAAAAAAAAAAAAAGGGGTGTTGT
TTCTTTTAAAAAAAAAAAAAAAAAAAGGCAGGGAGGAGGATTGGTGTTTC
CACATTTTTGGAGAGACTAAAAAAAAAAAAAAAAAGTATATTTTTTCTGG
TGTGTGGTGGGGTTGAGGGAAGAGAAAAAAAGAAAAAAAGAGAAGATGTT
GGCTTTGCTTTTTCTTAATTCAATAGCAAGCAACCAGTGATACCTTTTTT
TTATTATTTTATTTAAATCTCTCTAATTTTTCTGAATTTATAGGTGGTGG
AGGCAGAGTAGAACAGCCTAAATTCATTTCTATCATCGTTTATATG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATCAAAATATATTGCATGAAGTTCT
CAAGGAATTAATTAATGTAGTTCTTAATACTGTACTGAACATATACAGAC
CACTTATATTTCAATTTCCTAAATAACATCTCCTTTTATAGCACTTACAT
TACATTAAGGGCAAAAGTAATCCAGAGATTATTTAAAATAAAGAAGGATC
AGGGGATATGGCCCAGAGGCAATGCCATGTGTGTTTTCAAACATTCACCT
ACAACACCAGTGCTTAGGATTTTGGGAGGGGCAGAGACAGGAAGATGACT
GTGGCTTCCTGAAAGCCAGCCTCACTACCAGCTCAGCAACAAACCCTGTC
ACAAGGGGATAAATTAGGGAGTAAAGTAGCAGAACACACTACACCCTTCC
CTAGCCTCTGAACTTACCTGTACAGTTCTCTATGCAGACACACATAAATA
TGATTAGAATATACAAGAGGTTACTTTGAATAGCTTATATGCAAATGCAA
TGTTGTTTTAGACTTGAAACCTGAGACTTTATATCATTAGGGTTCCAGAA
GCAAACACCCCAAATATAGAGAATAGATAAATCTTCTTACTCTGCAAAGG
AGACCTCAGTTAAGTGTGTGTGTCAGTGACACCAAAAGGTTTCCTCCTCT
ATGTTCATTTACATAGCATAGAATGATCTGTAAATAATGAAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_p01.g1 MSMg01no502_p01.g1 CHROMAT_FILE:
MSMg01no502_p01.g1 PHD_FILE: MSMg01no502_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:05 2005
         (665 letters)



>mm_chrY_1310817_1311882
          Length = 1066

 Score =  567 bits (293), Expect = e-165
 Identities = 569/667 (85%), Gaps = 35/667 (5%)
 Strand = Plus / Minus

                                                                        
Query: 20   ttctcaaggaattaattaatgtagttc-tta-ata------ctgtactgaacatatacag 71
            |||||||||||||||| || || |||| ||| |||      |||||||||||||||||||
Sbjct: 1066 ttctcaaggaattaataaaagtggttctttatataccacatctgtactgaacatatacag 1007

                                                                        
Query: 72   accacttatatttcaatttcctaaataacatctccttttatagcacttacattacattaa 131
            |||||||||||| | || |||||||||||| |||||| ||||||| || |||| ||||||
Sbjct: 1006 accacttatattgccatctcctaaataacaactccttgtatagcagtttcattgcattaa 947

                                                                        
Query: 132  gggcaaaagtaatccagagattatttaaaataaagaaggatcaggggatatggcccagag 191
            ||||||||||||||||||||| ||||||||||||||| || | | ||| ||||||||| |
Sbjct: 946  gggcaaaagtaatccagagatcatttaaaataaagaaagacctgtggagatggcccaggg 887

                                                                        
Query: 192  gcaatgccatgtgtgttttcaaacattcacctacaacaccagtgcttaggattttgggag 251
            | |  |||| ||| ||  ||  |||||||||||||||| ||||||||||||  | |||||
Sbjct: 886  gta--gccaagtgagtgatcccacattcacctacaacaacagtgcttagga--tggggag 831

                                                                        
Query: 252  gggcagagacaggaagatgactgtggcttcctgaaagccagcctcactacc-agctcagc 310
            ||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||
Sbjct: 830  gggcagagacaggaagatgactgtggcttcctgaaagccagccccact-cctagctcagc 772

                                                                        
Query: 311  aacaaaccct-gtcacaagggga-taaattagggagtaaagtagcagaacacactacacc 368
            || | | ||| ||||||| |||| ||||||||||||| ||| |||||| ||||| | |||
Sbjct: 771  aagaga-cctggtcacaa-gggagtaaattagggagtgaaggagcagagcacacaatacc 714

                                                                        
Query: 369  cttccctagcctctgaacttacctgtacagttctctatgcagacacacataaatatgatt 428
            |||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||
Sbjct: 713  cttccctagcctctgaacttacctgtacaggtctgtatgcatacacacataaatatgatt 654

                                                                        
Query: 429  agaa-tatacaagaggttact-ttgaatagcttatatgcaaatgcaatgttgttttagac 486
            | || |||| ||||||||| | ||| |||| ||||||||||| |||||||||| |||| |
Sbjct: 653  a-aagtatataagaggtta-tgttgcatagattatatgcaaaagcaatgttgtcttagcc 596

                                                                        
Query: 487  ttgaaacctgag-acttt-atatcattagg-gttccagaagcaaacaccccaaatataga 543
            | |  ||||||| ||||| ||||||||||| || || | ||||||| ||||| |||||||
Sbjct: 595  tagggacctgaggacttttatatcattaggagt-cctggagcaaactccccagatataga 537

                                                                        
Query: 544  gaatagataaatcttcttactctgcaaaggagacctcagttaagtgtgtgtgtcagtgac 603
            |||| | || | ||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 536  gaatgggtataccttcttactgtgcaaaggaaacctcagttaagtgtgtgtgtcagtgac 477

                                                                        
Query: 604  accaaa-aggtttcctcctctatg-ttc--atttacatagcatagaatga-tctgtaaat 658
             ||| | |  ||||||| |||| | |||  |||||  ||||| ||||| | |||||||||
Sbjct: 476  tccacacatctttcctcttcta-gattcctattta--tagcacagaat-agtctgtaaat 421

                   
Query: 659  aatgaaa 665
            |||||||
Sbjct: 420  aatgaaa 414


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1066
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1056
Effective search space:   691680
Effective search space used:   691680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)