BAC Information

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BAC

Clone NameMSMg01-505H22
ChromosomeY (Build37)
Map Location 2,603,659 - 2,603,761
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236
Downstream geneEG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505H22.T7 (MSMg01no505_h22.b1)MSMg01-505H22.TJ (MSMg01no505_h22.g1)
ACCAG580119AG580120
length765760
length of high quality
(start - end)		656 (52 - 707)563 (71 - 633)
definitionCHROMAT_FILE: MSMg01no505_h22.b1 PHD_FILE: MSMg01no505_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:25 2005CHROMAT_FILE: MSMg01no505_h22.g1 PHD_FILE: MSMg01no505_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATCTCTTCCTGGTTTTGATTCCCATATCCTGAGATTAAA
GTCCTTTCTAAGCAGATCTCAACACCTTTTTTTAAAATTTTCTGTCTCAC
AGTTCTTGAAGAATAGATGGGGGAGCCGAGAAAATTTCACCCCCAAAAAT
TGGCAATTAGTGGCTGCAGGTGTGAGGGCCAGTTTTCTTCATAGATTTGG
CTCCTCAGAGGCTGCCCATGTTCCAGTGGATGTGTTTCCCTAACCCCACA
TATGTAGTCAGCACTAAATTCACTCAGTGGTCTTTATTAAAATGTGTATG
GAATTAAGGCTAAAAGTGATACAGGAGAAATGGAGAGCAATTCAAGGAGG
AGATGGTGATGGATTTACTCAAACTCATTATGTTTATGTACAAAGTTCTT
CAGCAAAACATTTAAAACTAAGTAAGTAAGTAAATAAGTAAATAAGTAAG
CAATAAGCAAGCAAGCAAGTAAGTAAAAAATAAATATATGTGTAAATAGA
CAAATATATTTTTATGCAATCTCACGTGCAATAGGCATGAAAGTGTGTGT
GTGTGTGTGTGTGTGTGTCTTTGTGTGTGTGTGCATACATGCATACAGGA
GTGTTTGCAGGTATGTAGCAGTTTGATGATTAGAATATCCTTGGCCCATG
GGAAGTGGCACTATTAGCAGATGTGGCCTTGATCATTGTGTAGGCTGACT
TTTATCTAGTGCTCA

ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCACATTTTTGTAT
GGGGGTTATTTGATTTTCTGAAGTTCACCTTGAGTTCTTTATATATGTTG
CATATTAGTACCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATC
TGTTGGTGGTCTTTTTGTTTTATTGATGGTGTCTTTTGCCTTGCAGAAAC
TTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAA
GCCATTTCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAG
GCTTTTCCCCCCTTTCTCCTCTATAAATTTCAGTGCCTCTGGTTTTATGT
GAAGTTCCTTGATCCACTTAGATTTGACCATATTAGAAGGAGATAAGCAT
GGATCAATTCGCATTCTTCTACATGATTACAACTAGTTGTGCCAGCACCA
ATTGTTGAAAATGCTGTCTTTCTTCCACTGCAACGTTTTAGCTCCCTTGT
CGAATATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATT
CTGTTCCATTGGTCTACGTGTCTGTCTCTATACCAGTACCATGCAGTTTT
TATCACAATTGCTCTGTAGTAAAGCTTAAGGTAGGCATGGTGATTCCACC
ACATGTTCTGTTATTCTTGAGAAGAGGTTTTATCATCCCTAGATTTTTTT
GTTTTCCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_h22.b1 MSMg01no505_h22.b1 CHROMAT_FILE:
MSMg01no505_h22.b1 PHD_FILE: MSMg01no505_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:25 2005
         (656 letters)



>mm_chrY_2603455_2604511
          Length = 1057

 Score =  137 bits (71), Expect = 2e-36
 Identities = 95/105 (90%), Gaps = 5/105 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatctcttcctggttttgattcccatatcctgagattaaagtcctttctaagcag 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gaattcatctctaactggttttgattcccatatcctgagattaaagtcctttctaagcag 248

                                                        
Query: 65  atctcaacaccttttt---ttaaaattttctgtctcacagttctt 106
           | |||||||  |||||   || ||||||||||||||||| |||||
Sbjct: 247 acctcaaca--tttttgtttttaaattttctgtctcacaattctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1057
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1047
Effective search space:   676362
Effective search space used:   676362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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