BAC Information

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BAC

Clone NameMSMg01-511H24
ChromosomeY (Build37)
Map Location 1,792,399 - 1,792,809
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137
Downstream geneLOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511H24.T7 (MSMg01no511_h24.b1)MSMg01-511H24.TJ (MSMg01no511_h24.g1)
ACCAG584681AG584682
length753760
length of high quality
(start - end)		565 (73 - 637)524 (76 - 599)
definitionCHROMAT_FILE: MSMg01no511_h24.b1 PHD_FILE: MSMg01no511_h24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:23 2005CHROMAT_FILE: MSMg01no511_h24.g1 PHD_FILE: MSMg01no511_h24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGA
ATTCAATATCTCTCCACACACGGTCAAGGGGGGTGGTCCCCCATGTAGAA
TTTCATAAGGAGTAATGCCGAAACACCCAGGTGTGTTTCGGGCCCTAAGG
AGCACAAAGGGAAGGAGGGTCACCCAGTCTTTACCACTGGTCTCAAAAGC
TAATTTAGTTAGGGTTTCTTTTAGAGTCCTGTTCATTCCTTCTACCTATA
CTGATCTCTGGGGTTTATAAGCACAATATAACTTCCAATTTTTCCCCAAA
TGTGTGGCTAATTCCTGACTTACCTGGGCAACAAATGCAAGCCCATTATC
CAAGCATATTACCCTGGGGATCCCAAACTGGGGTAGGATCTCTTCAACGA
TCTTCTTGGTCACCACCTGAGCAGTTTCAGACTTGGTGGGGAAGGCTTCT
ACCCATCCCGAGAAAGTGTCTATGAAAACTAGTAACTATTTATTACCATA
TTTTCCTGGTTTGATCTCAGTGAAGTCTACTTCCCAGTAAACTCCAGGTC
TATCCCCCAGTTGTCGTTTTCCTTGTTCATTAAAGGGGCTTGCAGAATTA
ATTAGGGAACACACTTGCAGGATTTAGTTACTTGTTCGTCTAGTAGCCTG
AGCACATAATAGTTTGAGGACTGGATTAAATCACANCATTTCTTTGCTCC
CATATGTGTCAGGGGATGGATGCGTTTTTCATATGCCCTTTCTTCTCTAT
AGG

CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGTCCAGAATAATTGAGACAGCAG
GTCCTCCTAAAGGGATACTCTCCTCTTCAGCCTCCTTCAGTCTTTCTCCA
ATTCCCCAATGGTTCAGCAGATTCTGTCCATTGGTTGGTTGCAGACATAT
GCATCTGATTGTTTCAACTGCTCATTAGGTCTTCAGAAGTGCATTCATGC
TAGTATTCACATTACAATTATGTGAATTCAGAAGCCAGCAGAGTTCGTGG
ACTGCAAGCAGGTCTTCTGAAAAAGCAATGCATGATATAATTACCTGAAT
TTTCTGGCAGTGCTCTTCAATATTGTGTTCTACGTGATGCAATATTCCAC
TCTCTTTCTCTATCTCTGTCTCTGTCTCTGTCCCTCTCTGTCTCTGTCTC
TCTCTGTCTCTTTGTCTCTCTCTCTCTGTCTCTCTGTATCTGTCTCTGTC
TCTGTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTCTCTCTCTCTCTGTC
TGTCTCTCTCNATATCTATTCCTCTAACACTCACTGTGACTAATGATTCT
CTTATCTTCCCCTCCACACAGGCATGATTTTTTAATGCTCTCCGCAAATT
GTTTTTTTGTAATCCGCATAGGGTAAGGACACCTTTAAATCTGTGGCTAC
CCCCAAAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_h24.g1 MSMg01no511_h24.g1 CHROMAT_FILE:
MSMg01no511_h24.g1 PHD_FILE: MSMg01no511_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:23 2005
         (524 letters)



>mm_chrY_1792095_1793018
          Length = 924

 Score =  594 bits (307), Expect = e-174
 Identities = 388/417 (93%), Gaps = 11/417 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtccagaataattgagacagcaggtcctcctaaagggatactctcctcttcagcctcc 60
           |||||| |||||||| ||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 715 tggtcctgaataattaagacagcaggtcctcctaaagggataccctcctcttaagcctcc 656

                                                                       
Query: 61  ttcagtctttctccaattc-cccaatggttcagcagattctgtccattggttggttgcag 119
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ttcagtctttctccaattcacccaatggttcagcagattctgtccattggttggttgcag 596

                                                                       
Query: 120 acatatgcatctgattgtttcaactgctcattaggtcttcagaagtgcattcatgctagt 179
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 595 acatatgcatctgattgtttcaactgctcattaggtctgcagaagtgcattcatgctagt 536

                                                                       
Query: 180 attcacattacaattatgtgaattcagaagcca-gcaga-gttcgtggactgcaagcagg 237
           ||||||||||||||||||||||||||| || || ||||| ||| | ||||||||||||||
Sbjct: 535 attcacattacaattatgtgaattcaggag-cacgcagaggtt-gcggactgcaagcagg 478

                                                                       
Query: 238 tcttctgaaaaagcaatgcatgatataattacctgaattttctggcagtgctcttcaata 297
           ||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 477 tcttctgcaaaggcaatgcatgatataattacctgaattttctgtcagtgctcttcaata 418

                                                                       
Query: 298 ttgtgttctacgtgatgcaatattccactctctttctctatctctgtctctgtctctgtc 357
           |||| ||||||||||||||||||||| ||||||||||||  |||||||| | ||||||||
Sbjct: 417 ttgtattctacgtgatgcaatattcctctctctttctct--ctctgtctgtctctctgtc 360

                                                                    
Query: 358 cctctctgtctctgtctctctctgtctctttgtctct--ctctctctgtctctctgt 412
             |||||  |||||||||||||||||||| |||||||  |||||||| |||||||||
Sbjct: 359 tgtctct--ctctgtctctctctgtctctctgtctctgtctctctctctctctctgt 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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