Query= MSMg01no513_m12.b1 MSMg01no513_m12.b1 CHROMAT_FILE:
MSMg01no513_m12.b1 PHD_FILE: MSMg01no513_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:24 2005
(688 letters)
>mm_chrY_1648464_1649549
Length = 1086
Score = 296 bits (153), Expect = 4e-84
Identities = 261/309 (84%), Gaps = 25/309 (8%)
Strand = Plus / Minus
Query: 385 acatgctcttggagacagg----ggccagttgatatggcatgtggaacagtaggagggtg 440
||||||||||||||| ||| || |||| ||||||| |||| ||||||||||||||||
Sbjct: 1068 acatgctcttggagataggggatgggcagtagatatgggatgttgaacagtaggagggtg 1009
Query: 441 gacagggttcaatgaatgaatgaattaataaataaaaaagaatactgccaagtaacca-c 499
||||||| | || |||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 1008 gacaggg--c--tggatgaatgaattaattaataaaaaagaatagtgccaagtaaccagg 953
Query: 500 gccccatatactctaattctttaatcataatccaagaaaactcacatgttcacataacag 559
||||| |||||||||||| | ||||| ||||||||||||||||||||| |||||||||
Sbjct: 952 gcccc-tatactctaattgtggaatcagaatccaagaaaactcacatgtacacataacaa 894
Query: 560 cacactcaaaaatataactaaaaaatacacacacacatataactgaaattccatgatttt 619
|||||||||||| ||||||| || ||||||||||||| ||||||||
Sbjct: 893 cacactcaaaaa--------------acacacatacctataactgaaattttatgatttt 848
Query: 620 gaagttcattttacaaagaaatacagtggaacagagtttttcttttgttccattaattta 679
||| ||||||||||||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct: 847 gaaattcattttacaaagaaatacactagaaca-tgtttttcttttgttccattaattta 789
Query: 680 catacattt 688
|||||||||
Sbjct: 788 catacattt 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1086
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1076
Effective search space: 729528
Effective search space used: 729528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_m12.g1 MSMg01no513_m12.g1 CHROMAT_FILE:
MSMg01no513_m12.g1 PHD_FILE: MSMg01no513_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:24 2005
(671 letters)
>mm_chrY_1265962_1267035
Length = 1074
Score = 598 bits (309), Expect = e-175
Identities = 591/699 (84%), Gaps = 44/699 (6%)
Strand = Plus / Plus
Query: 1 catcaaaaaaaattgtatgaagttctcaaggaattaattaatgtagttcttaatatacaa 60
|||||||| | |||||||||| |||||||||||||||| || |||||||||||||||| |
Sbjct: 192 catcaaaatatattgtatgaaattctcaaggaattaatgaaagtagttcttaatatacca 251
Query: 61 tgtctgttctgaacatatacagatcacttatatt-tcaatctcctaaatagcaactc--a 117
||||||| ||||||||||||||| |||||||||| || |||||||||||| |||||| |
Sbjct: 252 tgtctgtactgaacatatacagaccacttatattgtc-atctcctaaataacaactccta 310
Query: 118 ttttgtagcacttacattacattaagtgcaaaagtaatccagagattatttaaaataaag 177
| ||||| || |||| ||||||| |||||||| |||||||||| |||||||||||||
Sbjct: 311 ---tatagcagtttcattgcattaagggcaaaagtcatccagagatcatttaaaataaag 367
Query: 178 aaggatcaggggatatggcccagag--acaatgcc-atgtgtgtgttcaaacattcacct 234
|||||||||| | ||||||||| | | || ||| || ||| || ||| ||||||||||
Sbjct: 368 aaggatcaggcaagatggcccaggggta-aa-gccaat-tgtttggtcagacattcacct 424
Query: 235 acaacaccagtgcttatgattttgggaggggcagagataggaagatgactgtggcttcct 294
| |||| ||||||| | || | |||||||||||||| || |||| ||||||||||||||
Sbjct: 425 ataacaacagtgctcagga--tggggaggggcagagacagaaagaagactgtggcttcct 482
Query: 295 gaaagccagc------------tcagcaagaaacccagtcacaa-ggagataagttatgt 341
|||||| ||| |||||||||||||| |||| || ||| | || ||| |
Sbjct: 483 gaaagcaagcctcactcctaggtcagcaagaaaccctgtcataaggga-acaaatta-g- 539
Query: 342 agga---aaagagtagatcacactatacccttccctagcctctgaacttacctgtacagt 398
||| || ||| ||| |||||| |||| |||||| ||||||||| ||||||||||||
Sbjct: 540 -ggagtgaaggagcagaacacactgtacctttccctggcctctgaatttacctgtacagg 598
Query: 399 tctctatgcagactcacataaatatgattaaaatatgcaagaggttattttgcatagctt 458
||| |||||| || |||||||||||||||||| ||| |||||||||| ||||||||| ||
Sbjct: 599 tctgtatgcacacacacataaatatgattaaagtatacaagaggttactttgcatagatt 658
Query: 459 atat-tcaaaagcaatgttgttttagactagaaacctgaggac-tttatatcattatagt 516
|||| | ||||||||||||||||||| ||||| |||||||||| |||||||||||| |
Sbjct: 659 atatgt-aaaagcaatgttgttttagcctagagacctgaggacttttatatcattagggg 717
Query: 517 tcctggagcaaactcccaagatatagatg---atgggtatatcttcttactgtgcaaagg 573
||||||||||||||||| | ||||||| | ||||||||||||||||||||||||||||
Sbjct: 718 tcctggagcaaactccccatatataga-gagaatgggtatatcttcttactgtgcaaagg 776
Query: 574 aaacctcagttaagtgtgtgtgtcagtgacttcaaacagctttcctcctctatgttact- 632
||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct: 777 aaacctcagttaagtgtgtgtgtcagtgactccaaacagctttcctcctctaaattccta 836
Query: 633 ttatatagcatagaatgatctgtaaataatgaaaatatg 671
|| ||||||| ||||||||||||||||||||||| ||||
Sbjct: 837 tt-tatagcacagaatgatctgtaaataatgaaactatg 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1074
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1064
Effective search space: 703304
Effective search space used: 703304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
