Query= MSMg01no518_g01.b1 MSMg01no518_g01.b1 CHROMAT_FILE:
MSMg01no518_g01.b1 PHD_FILE: MSMg01no518_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:46 2005
(703 letters)
>mm_chrY_1270130_1271229
Length = 1100
Score = 441 bits (228), Expect = e-128
Identities = 528/640 (82%), Gaps = 45/640 (7%)
Strand = Plus / Minus
Query: 8 ttgggaacagacactccactcatatgaagccaggaaaccctcttgcataccacacatgaa 67
|||||||||||||||||||||||||| || || ||| ||| || ||||| ||||||
Sbjct: 666 ttgggaacagacactccactcatatgcagtcatgaatccccctaccatac----catgaa 611
Query: 68 accttgagttcagcagttccataacct-atgtgtctctaagtatgaaatgggaagattta 126
|||||||||||||||| ||||||| || |||||||||||||||||||| ||||| ||||
Sbjct: 610 accttgagttcagcagatccataa-ctcatgtgtctctaagtatgaaaccggaagtttta 552
Query: 127 tattctcattgtcttgttaatcctgttttctcttaaattccagaaattaaaccaatgtat 186
|||||||||||||||| ||||||| |||||| | |||| | |||| ||||| |||||
Sbjct: 551 tattctcattgtcttgctaatcctattttctgtcaaatgctagaagctaaactgatgtaa 492
Query: 187 tctcagattcaggatggta-gaacacaacatttt-gtctttctggaatagcatccaacta 244
||||||| ||||||||||| | |||||| |||| || |||||||||||||||||| |||
Sbjct: 491 tctcagactcaggatggtatg-tcacaac-ttttggtatttctggaatagcatccaccta 434
Query: 245 tcatcagaaagacttttcaacttaccctcaggacaataa-gtatccatttagagggtttt 303
||| |||| ||||||||||||||||||||||||||||| | ||| |||| |||||||||
Sbjct: 433 tcagcagagggacttttcaacttaccctcaggacaataaag-atctattttgagggtttt 375
Query: 304 aac-aggataacaaat-gtat--ttagttttctatttgagaaatagactgtctagaatgt 359
|| ||| | || | || | |||||||||||||||||||||| |||| | |||||||
Sbjct: 374 aatgagg-tgac---tcgtgtgcttagttttctatttgagaaatacactggccagaatgt 319
Query: 360 acaacaatgtacaggtta--aaatgaacttac--cttggagcctggcaacagtgaactga 415
||||||| ||||| ||| |||||||| ||| | |||||||| |||| ||||||||
Sbjct: 318 acaacaacatacag-ttacaaaatgaacatacacca--gagcctggtaacaatgaactga 262
Query: 416 aaataattgtcagtg-gtgttctctgtatatggaatatgtcaagggaatagatcttagag 474
| ||||||| || | ||| | ||||||||||||||| || |||||||||||| ||||
Sbjct: 261 ctgtgattgtcactgag-gttttgtgtatatggaatatgccatgggaatagatctgagag 203
Query: 475 tgacagagacagagt--ggat--atgga--cagagacagagacatagagaaatagaatgg 528
||||||||||||||| ||| ||||| |||| ||||||| || ||||||||
Sbjct: 202 tgacagagacagagtagggagggatggatacagacacagaga----ga----tagaatgg 151
Query: 529 ggtgatgagatgatggatggtcttgattttaaaacgtaaatgaagaaaatatctaatgta 588
|||||| |||||||||||| | |||||||| ||| ||||||||||||| ||||||| ||
Sbjct: 150 ggtgataagatgatggatgattttgattttcaaatgtaaatgaagaaagcatctaatata 91
Query: 589 atattgaaagaaagaaaaaaag-aatcatttttacaatat 627
||||||||| ||||||| |||| ||| ||| ||||||||
Sbjct: 90 atattgaaataaagaaagaaaggaatg-tttgtacaatat 52
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1100
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1090
Effective search space: 755370
Effective search space used: 755370
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no518_g01.g1 MSMg01no518_g01.g1 CHROMAT_FILE:
MSMg01no518_g01.g1 PHD_FILE: MSMg01no518_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:46 2005
(620 letters)
>mm_chrY_1791801_1792820
Length = 1020
Score = 395 bits (204), Expect = e-114
Identities = 509/670 (75%), Gaps = 134/670 (20%)
Strand = Plus / Minus
Query: 20 ggactgcaagcaggtcttctgaaaaagcaatgcatgatataattacctgaattttctggc 79
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
Sbjct: 785 ggactgcaagcaggtcttctgcaaaggcaatgcatgatataattacctgaattttctgtc 726
Query: 80 agtgctcttcaatattgtgttctacgtgatgcaatattccactctctttctctatctctg 139
|||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 725 agtgctcttcaatattgtattctacgtgatgcaatattcctctctctttctc-------- 674
Query: 140 tctctgtctctgtccctctctgtctctgtctctctctgtctctttgtctctctctctgtc 199
|||||| ||||| ||||||| |||||||||||||| ||||||||||||
Sbjct: 673 tctctg--tctgt--ctctctg--tctgtctctctctg----------tctctctctgtc 630
Query: 200 tctctgtatctgtctctgtctctgtctctgtctctgtctctgtctctgtctctgtctc-- 257
|||||||||||||||| |||| |||| |||||||||| ||||
Sbjct: 629 ------------tctctgtctctgtctc--tctc--tctc--tctctgtctc--tctcaa 590
Query: 258 tgtct-ctctctct--ctctc--tct--ct-----ctctctt-tctctctctctct-c-- 301
| ||| ||| |||| | ||| | | || |||||| ||| |||||| || |
Sbjct: 589 tatctactc-ctctaacactcagtatgactaatgattctcttatct-tctctc-ctacaa 533
Query: 302 ------tg---tctg--tctc-tct-ca--at--atcta--ttcctctaacactcag--t 340
|| | || | || ||| || || ||| | || ||| ||| ||| |
Sbjct: 532 aggggatgacatttgaatgtcatctgcaacattcatccacttt--tct-aca--caggtt 478
Query: 341 atgactaatgattctctt----at---ct----tc----tc-----ttc--------tac 372
|| || ||||||| || || || || ||| |||
Sbjct: 477 gtg-ct-----ttctcttagcaatcaactaatatcaaagtcacactttcactcagattac 424
Query: 373 aaaggggatga--tattttaatgtcatctgcaaattgttattctgaatcggagtagggaa 430
||| || | ||| | || ||| ||||||||||||||||||||| |||||||| |
Sbjct: 423 aaa----ataatgtatctgaa-ctca--tgcaaattgttattctgaatcagagtagggga 371
Query: 431 aggacactttaaatctgttgttacacccaagagcatggcttttaaaacctggtgaatcag 490
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aggacacttcaaatctgtagttacacccaagagcatggcttttaaaacctggtgaatcag 311
Query: 491 tagaagatgagacaatgtatagaagaggttgcttcttttgctttggtttggtttagcttt 550
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 310 tagaaaatgagacaatgtatagaagaggttgtttcttttgctttggtttggtttagcttt 251
Query: 551 gtttatttctgttacacgcaatcattagaagaaactctgtgaaatactgcctaatgcaaa 610
||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||
Sbjct: 250 gtttatttctgttacacgcaatcattagaagaaactctgagaaatactgtctagtgcaaa 191
Query: 611 tttcctgaag 620
||| ||||||
Sbjct: 190 tttactgaag 181
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
