BAC Information

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BAC

Clone NameMSMg01-521B22
ChromosomeY (Build37)
Map Location 1,316,265 - 1,316,918
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521B22.T7 (MSMg01no521_b22.b1)MSMg01-521B22.TJ (MSMg01no521_b22.g1)
ACCAG591989AG591990
length753732
length of high quality
(start - end)
653 (49 - 701)636 (81 - 716)
definitionCHROMAT_FILE: MSMg01no521_b22.b1 PHD_FILE: MSMg01no521_b22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:21 2005CHROMAT_FILE: MSMg01no521_b22.g1 PHD_FILE: MSMg01no521_b22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:21 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNCCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTTGTCTCTCAGTGCACTCTACTCTTTGTGTTCCTTATTGC
TTTTAATGGTCACCATCAATTAGAACTTTCTTATCTTCATCCTGGTCTGT
TTTCTGCATGTGAATTTTGGATTTCTTTAAAAAGATATCTTTATCGGATT
AGAGAGATGAATCAATGGTAACAAGCACTTTTGCACCACAAGAATAGATC
TGGTTTCTTGATTTCATATCCACTGGCCAGTAATCACCTTTAATGGCAGC
TCCAGGGGACCTGACAACTCATGTCTCTGTGCTCACCTGTACTCAAAAGG
ACATGCAATATCCCCACCCACATAAGTAAAGATAATAAATCTTAAAATGT
GAGACAGATTTCACTAAGTTTCATTATTCAAATGAAACCTGATTTTCTCT
GATTTCTGAGTCTATTTCAATCAGTTTTCTGCGTTTCACCTTGTGTAACA
AGGCCACATTTCTTTTAAATGTCCCTCTTTCCCCAACTTTTTGTTTCTCC
TTCAGTGTTCACATCAGAGTTTCTACCTATGCTCTGTCCTTCTCCCCTAC
TTCCTAAACATCCATCTTTTGCTGCTATCTCTGCTCCTCCAAGTTCCATC
TCCAATTCCTTATTCTACATGCAGACCAGAGAAGCTGTTCCTTTTAGCAT
GTATGATTTTAGGTGTATGTACTGTTCACCACCTGAAATGAAACTTTCAT
CTT
NNCCACGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTTAGCTCTGAGCCCC
ATTTTTAAATGGAGTTATTTGATTTTCTGGAGTCCACCTTCTGAGTTCTT
TATATATATTTGATATTACTCCCCTATCTAATTTAGGATAGTGAAAGATC
CTTTCACAATCTGTTGGTGACCTTGATTTAGTTTCCAGGATCTGTCCATT
AATGAAGGAGGGGTGTTGAAGTCTTCCAATATTATTGTGTGTGGTACAAT
GTGTGTTTTGAGTTTACTAAAGTTTCTTTTATCAATGTGGATGTCATTGC
ATTTGGAGTATAAATGTTTAGATTTGGGATTCCATTTTGGTAAATATTAA
CTTTAATGAATATGAAGTTTCCTTCCTTGACTTTTTTTTATAACTTTGGG
TTGAAAGTCAATTTTATTTGATATTAGAATGGCTGCTCCACCTTATTTCT
TCGGATCATTTGCTTGGAAAGTTCTTTTCCAGCCTTTTAGTCTGAGGTAA
TGTCTGACTTTGTCCTTGGTGTTTGTTTCTGGTGTGCTGAATATTGCTTA
CACATCCATTTTGTTATTCTATGCCTTTTTACTGGTGAACTGAGTCCACT
GATATTAAGAGATACTAAGGAAAAATTCTTGTTGCTTCCTGTTATTTTTG
TTATTAGAGTTGGAATTTTGTTCATGTAGCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_b22.b1 MSMg01no521_b22.b1 CHROMAT_FILE:
MSMg01no521_b22.b1 PHD_FILE: MSMg01no521_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:21 2005
         (653 letters)



>mm_chrY_1316067_1317111
          Length = 1045

 Score =  468 bits (242), Expect = e-136
 Identities = 560/682 (82%), Gaps = 60/682 (8%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatttgtctctcagtg-cactctact-ctttgtgt-tcc-ttattgctttt--a 57
           |||||||||||||| | ||||| | ||||||| |||||||| ||| ||||| |||||  |
Sbjct: 199 ggaattcatttgtcccccagtgtc-ctctactcctttgtgtgtcctttatt-ctttttca 256

                                                                       
Query: 58  atggtcaccatcaattagaactttcttatcttcatcctggtct--gttttctgcatgtga 115
           | | |||||| ||||| || |||||||| ||||||||||||||   ||||  || |||||
Sbjct: 257 a-gatcaccagcaatttgatctttcttaccttcatcctggtctccctttt-ggc-tgtga 313

                                                                       
Query: 116 attttggatttctttaaaaagatatctttatcggattagagagatga-atcaatggtaac 174
           || ||||||||| |||||||| ||| ||||| ||| ||||||||||| | || ||||  |
Sbjct: 314 atattggatttc-ttaaaaaggtatatttatgggactagagagatgaca-cagtggt--c 369

                                                                       
Query: 175 a--agcacttttgcac-cacaagaa---tagatctggtttcttgatttcatatccactgg 228
           |  ||||||||||||| | ||||||   | ||| ||||| ||||| ||| |||||| |||
Sbjct: 370 aagagcacttttgcactc-caagaagactggatttggttccttgaattcgtatccaatgg 428

                                                                       
Query: 229 c-cagtaatcacctttaatggcagctccaggggacctgacaactcatgtctctgtgctca 287
           | ||  ||||| |||||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct: 429 ctca-caatcatctttaatgccagctccaggggacctgacaactcatttctctgtggtca 487

                                                                       
Query: 288 cctgtactcaaaaggacatgcaatatccc--caccca--cat--aagtaaagataataaa 341
           |||||||||| ||| |||||      |||  ||||||  |||  ||||||| ||||||||
Sbjct: 488 cctgtactcacaagcacatg------ccctacacccactcataaaagtaaaaataataaa 541

                                                                       
Query: 342 tcttaaaatgtgagac-agatttcactaagtttcattattcaaatgaaacctgattttct 400
           |||||||| | ||||| || ||||| || | ||||||||| |||||||||||||||||||
Sbjct: 542 tcttaaaaagagagacaag-tttcattaggcttcattatttaaatgaaacctgattttct 600

                                                                       
Query: 401 ctgatttctgagtctatttcaatcagttttctgcgtttcaccttgtgtaacaaggccaca 460
           ||||||||||||||| |||  ||||||||| || |||| |||||||||  ||||| ||||
Sbjct: 601 ctgatttctgagtctgtttggatcagttttttgggtttaaccttgtgttccaaggtcaca 660

                                                                       
Query: 461 tttcttttaaatgtcc-ctctttccccaactttttgtttctccttcagtgttcacatcag 519
           || ||||||  || || ||| ||||||||  ||||||||||||| |||  |||||| |||
Sbjct: 661 ttccttttatctg-ccactcgttccccaa--ttttgtttctcct-cagacttcacaccag 716

                                                                       
Query: 520 agtttctacctatgctctgtccttctcccctacttcctaaacatccatcttttgctgcta 579
           || ||||||||||| | |    || ||||||||||||||||||||||||||||||||| |
Sbjct: 717 agattctacctatgtttt----tt-tcccctacttcctaaacatccatcttttgctgcca 771

                                                                       
Query: 580 tctctgctcctccaagttcc-atctccaattccttattctacatgcagaccagagaag-- 636
           || |||||||||||| |||| |||||||||| |||  ||| |||||||| ||||||||  
Sbjct: 772 tccctgctcctccaa-ttcccatctccaatttcttgctcttcatgcagaacagagaagat 830

                                 
Query: 637 -----ctgttccttttagcatg 653
                |||||| ||||||||||
Sbjct: 831 aagtcctgttcattttagcatg 852


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1045
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1035
Effective search space:   665505
Effective search space used:   665505
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)