Query= MSMg01no522_f06.b1 MSMg01no522_f06.b1 CHROMAT_FILE:
MSMg01no522_f06.b1 PHD_FILE: MSMg01no522_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:54 2005
(593 letters)
>mm_chrY_2785631_2786620
Length = 990
Score = 781 bits (404), Expect = 0.0
Identities = 524/592 (88%), Gaps = 52/592 (8%)
Strand = Plus / Plus
Query: 5 gaattcatcaca-taaaaacagacagaagaagtagga-ataaagacatatttaggcaaga 62
|||||||||||| |||||| || |||||||||||||| |||||| |||||| |||||||
Sbjct: 248 gaattcatcacattaaaaa-aggcagaagaagtaggagttaaagaaatatttgggcaaga 306
Query: 63 tgaatagtgaagtagagattagagcaagcagaaaggactgaggagatagctcactgctta 122
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tgagtagtgaagtagagattagagcaagcagaaaggactgaggagatagctcactgctta 366
Query: 123 ggcccactgattgcttttgcacaggaccagggttcaatttctaacacccacatggttgtt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ggcccactgattgcttttgcacaggaccagggttcaatttctaacacccacatggttgtt 426
Query: 183 cacaaccacctgcaattctagttctagacgatctgatgacctctttggacaacacacaca 242
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 427 cacaaccacctgcaattctagttctagacgatctgatgacctctttgcacaacacacaca 486
Query: 243 cacacagacacacacacacgcacacacacatatactcacccacagagaaaaaaaaatatt 302
|||||| |||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 487 cacaca--cacat---------cacacacatatactcacccacagagaaaaaaaaatctt 535
Query: 303 ttagaaaacaattatacaaacaaaaaggagtcaagtatagttttattcccctttaatacc 362
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 t-agaaaacaattatactaacaaaaaggagtcaagtatagttttattcccctttaatacc 594
Query: 363 agcactcagaagcaggctaaactttgtaagttgaatgactgcctagctaataggtgtgtt 422
|||| ||||||||||||||| || |||||||||||||||||||||||| |||||||||||
Sbjct: 595 agcattcagaagcaggctaatctctgtaagttgaatgactgcctagctgataggtgtgtt 654
Query: 423 ttcagaattttatttttctcttctttttcttttttttcttttttcttttttttttttttt 482
||||||||||||||||||| ||||||||||
Sbjct: 655 ttcagaattttatttttct-------------------------------tttttttttt 683
Query: 483 ttggattttaggactatttcagtatttgtttaaagattctagattttttttcttttgatt 542
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 684 ttg-attttaggactatttcagtatttgtttaaagattctagatttttttt----tgatt 738
Query: 543 tactttttctaaggttttaggctttttt-cgggctttttagtattttacagt 593
|||||||||||| ||||||||||||||| |||| |||||| |||||||||||
Sbjct: 739 tactttttctaatgttttaggctttttttcggggtttttattattttacagt 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 990
Length adjustment: 10
Effective length of query: 583
Effective length of database: 980
Effective search space: 571340
Effective search space used: 571340
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_f06.g1 MSMg01no522_f06.g1 CHROMAT_FILE:
MSMg01no522_f06.g1 PHD_FILE: MSMg01no522_f06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:55 2005
(622 letters)
>mm_chrY_1271714_1272733
Length = 1020
Score = 352 bits (182), Expect = e-101
Identities = 501/634 (79%), Gaps = 70/634 (11%)
Strand = Plus / Plus
Query: 1 agaaaactgcagaggttgcttactgcaagaaggtattctgcaaaagcaata---gatgat 57
||||| ||||||||| ||| |||||||| |||| |||||||||||||||| ||| ||
Sbjct: 237 agaaacctgcagaggctgcctactgcaatcaggtcttctgcaaaagcaatacacgat-at 295
Query: 58 aaa-agtactgaaatatctatcagtgctctacaatattatattctaggtgatgaaatttc 116
||| | |||||| | ||| ||||||||||||| |||||||| ||||||||| ||
Sbjct: 296 aaata--actgaattttctgtcagtgctctaca-----atattctatgtgatgaaa--tc 346
Query: 117 tctttctctctgtctctgtgtctctgtgtctctgtctctatctctatgtctgtctgtctg 176
|| |||||| |||| |||| |||| |||| |||| || ||
Sbjct: 347 tc--tctctcaatctc----tctc----tctc--tctc--tctc--------tc--tc-- 380
Query: 177 tttgtctctctctctctctctctctcaatttctacttc-tctaatacttattatgaatta 235
||||||||||||||||||||||||| ||||| || ||||| ||||| ||||||| |
Sbjct: 381 ----tctctctctctctctctctctcaatatctac-tcttctaacacttagtatgaataa 435
Query: 236 tgattcttttatcttattccct-cca-at-gggaatgatattggaatggcatctgtaaca 292
||||||| ||||| ||| || | | || ||| |||||||||||||| |||||| ||||
Sbjct: 436 tgattctcttatc---ttctctgctacatagggcatgatattggaatgtcatctgcaaca 492
Query: 293 ttcattcacattcctacacaatttgtgctttctattaacaatcaactaatatcaaagtca 352
||||||||| ||||||| || |||||||||||| ||| |||||||||||||||||||||
Sbjct: 493 ttcattcactttcctactcagtttgtgctttctcttaggaatcaactaatatcaaagtca 552
Query: 353 cacattcactcagattacaaaataagatatctgagctcatgtaaagtgatattctgaatc 412
|||||||||||||||||||||||||| ||||| ||||||| ||| || |||||||| |
Sbjct: 553 cacattcactcagattacaaaataaggtatcttagctcatataac-tgttattctgagtg 611
Query: 413 agagtaggggatggg-cacttccaatgtgtagtttcactcaagagcatggcttttaagaa 471
||||| || || || |||||||||||||||||| ||| |||||| ||||| ||||| ||
Sbjct: 612 agagt-ggagaaaggacacttccaatgtgtagttacacccaagagtatggcctttaaaaa 670
Query: 472 ctggtcaattgga----agaagatgagacaatgtatagaagagggtgtttcttttggttt 527
||||| || | |||||||||||| |||||||||||||| | ||||||| |||||
Sbjct: 671 ctggtaaa----acagtagaagatgagaccatgtatagaagaggttatttcttt-ggttt 725
Query: 528 agtttggtttagctttgtttcttt-aggttacccacagtcattttaagaaacattgagaa 586
|||||||||| ||||| | ||| || |||| ||| ||||| |||||||| || |||
Sbjct: 726 ggtttggtttaattttgtctatttcag-ttacatacaatcattaaaagaaacactgggaa 784
Query: 587 acactgtttatta--cctatatcttgaactgaat 618
|||| || | | | |||||||||||||||||
Sbjct: 785 acacc--ttctcatgcatatatcttgaactgaat 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1020
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1010
Effective search space: 618120
Effective search space used: 618120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
