BAC Information

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BAC

Clone NameMSMg01-529C10
ChromosomeY (Build37)
Map Location 1,261,929 - 1,262,331
singlet/doubletsinglet
Overlap genenone
Upstream geneJarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529C10.T7 (MSMg01no529_c10.b1)MSMg01-529C10.TJ (MSMg01no529_c10.g1)
ACCAG598098AG598099
length741743
length of high quality
(start - end)
555 (71 - 625)624 (74 - 697)
definitionCHROMAT_FILE: MSMg01no529_c10.b1 PHD_FILE: MSMg01no529_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:59 2005CHROMAT_FILE: MSMg01no529_c10.g1 PHD_FILE: MSMg01no529_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:00 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCTCTTATATTTTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTAAGATGATTATCTCAAAATGTGAAGCAGGAGACCCAGGAAAA
ATAGAAATGTTGTGCAAATAGTTAAAATTGGGCATATCCACATTAGGTTC
TTTGGTTTCTTAACAAATAGCAAGCCGATATGGTCAAAGAGTAATTTAAA
AGAGAAAATGAATAAACTGTGAGATAATATATGGTGGGGCGTGGATCCTG
AGTTCTTTCCCTGTGCACTCTTTGCCTGGGATGAATCCTGTGATCTTTTG
GAGGTCTCTGTTGAGTGCCCCAGATGACCATCAAAAAGCTCCCACACTGG
CCTGTTCCCCTGGCTCTCCTCCAAACATCTGACTCCAACATACCTATGTA
CCATTTCAGCCTGTCTATTCCCTGGAAATTCCTGTCTCAAATTTATGTGT
GACCTCATTCACATAAAACAGTGAAGGTGTACTCAATGCATATGTGCTGA
TCTCTTTTCTATGCCTGTTCTCATGGGTTTCAAACTCTATGAGGTTGCCC
AATATGTTGGTCACTACTCCTGAGTAGCCCCTGTGCTTCATGGGGGTCTT
AATGGGTCCCATATGCACTCTGAGCGTTTCTTTCCGTTGTTTGGTTGGTT
GGTTTTATTGGTCATGCTTTTTTTGTTTGCTTTGTTATGCTTGTTTGCTT
GTTTTTTGTCTGATTGTTTTTGCATTGTTCTTTTGCCTTTG
NNAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCCCCAGAATTCTTTGGAAAGTAAGAGGACAACATA
GATCTTGGGCATGCTTACAAAGTTGTGATAAAATTAAAACAAACCTGATA
TTTCCCAGTCATATTTTAAAGGTTTTTAAAATTTACCAGCACTTCTGATT
ACAAGGAATTTCATAGATTAAATGCAGTAAAACAGGATGAAATAGATGAG
GTAATTTTACTTTTGAAATATGTGTAGACAGAATACTGGACACAGGTATG
TATAAAATTTACTTACATATTAGAGGACACTTTAATTGTTCATGCCACAT
AGATCTTCAGTTCTTCAAAAAAAAAATCCTTTTCAGTCCACGGTCCCCAC
CACACCCTGTACATCATCTTCATAGAATATGACACTATCCATAGAGAGCT
AGATCCTTCAACAACAGTCATCAAAAAAAAATCATTCCTTAAGGTGTGGC
CACAGGCCAATGTGATGGAGGATCTTTATCTGAGATTCTATCTTCCCAGG
TTGATTTAAATTCAAAAAAAAATCTAAGAAGGACCACTACATATCCATAT
CATCAATATTGATTGCCTCACTGTATGAAACATACATGCTATGTAGTGAT
TTTAGATGTCAACTATGGGATGAATGCCTTAAAAAAGAAAGACAGAGAGA
AAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_c10.b1 MSMg01no529_c10.b1 CHROMAT_FILE:
MSMg01no529_c10.b1 PHD_FILE: MSMg01no529_c10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:59 2005
         (555 letters)



>mm_chrY_1261610_1262566
          Length = 957

 Score =  236 bits (122), Expect = 3e-66
 Identities = 340/430 (79%), Gaps = 47/430 (10%)
 Strand = Plus / Plus

                                                                       
Query: 120 agtaatttaaaagagaaaatgaataaactgtgagataatatat---ggtggggcgtg--- 173
           |||||||||||||||||||||| ||  ||||||| |  ||| |   ||||     ||   
Sbjct: 320 agtaatttaaaagagaaaatgagtatgctgtgag-t--tattttcaggtgt----tgaat 372

                                                                       
Query: 174 -gatcctgagt-tctttccctgtgcactctttgcctgggatgaatcctgtgatcttttgg 231
            ||||||| || |||| ||||| |||||||||||||  |||| |||||||||| ||||| 
Sbjct: 373 agatcctgtgtatctt-ccctgagcactctttgcctttgatgcatcctgtgatattttg- 430

                                                                       
Query: 232 aggtctctgttgagtgcccc-agatgaccatcaaaaagctcccacactggcctgttcc-c 289
           || |||||| |||||||||| |||||||||||||||||||||||||||||| |||||  |
Sbjct: 431 agatctctgatgagtgcccccagatgaccatcaaaaagctcccacactggcttgttctac 490

                                                                       
Query: 290 ctggctctcctccaaacatctgactcca-acatacctatgtaccatttcagcctgtctat 348
           |||| ||||||||| |||| |||||||  ||||||| | |  | | ||||||||||||| 
Sbjct: 491 ctggttctcctccatacatatgactccctacatacccaagggcaacttcagcctgtctag 550

                                                                       
Query: 349 tccctggaaattcctgtctcaaattta-tg---tgtgacctcattcacataaaacagtga 404
            ||| |||| |||| ||||    |||| ||   | ||||||||||| || |||||  |||
Sbjct: 551 ccccaggaacttccagtct----tttactgatctatgacctcattctcagaaaactctga 606

                                                                       
Query: 405 aggtgtactcaatgcatatgtgctgatctcttttctatgcctgttctcatgggtttcaaa 464
           |||||  ||       |||||||||| |||||| ||||||| ||| || ||| |||||||
Sbjct: 607 aggtg--ct-------tatgtgctgacctctttcctatgccagttgtcctggctttcaaa 657

                                                                       
Query: 465 ctc-tatgaggttgcc---ca-atatgttggtcactactcctgagtagcccctgtgcttc 519
            || ||||||||||||   || |||    ||||||| |||||||| ||||||||||||||
Sbjct: 658 -tcctatgaggttgccaaccacata----ggtcacttctcctgaggagcccctgtgcttc 712

                     
Query: 520 atgggggtct 529
           ||||||||||
Sbjct: 713 atgggggtct 722


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 957
Length adjustment: 10
Effective length of query: 545
Effective length of database: 947
Effective search space:   516115
Effective search space used:   516115
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)