BAC Information

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BAC

Clone NameMSMg01-534I04
ChromosomeY (Build37)
Map Location 747,253 - 747,932
singlet/doubletsinglet
Overlap geneUsp9y
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246
Downstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534I04.T7 (MSMg01no534_i04.b1)MSMg01-534I04.TJ (MSMg01no534_i04.g1)
ACCAG602178AG602179
length726700
length of high quality
(start - end)
684 (43 - 726)217 (73 - 289)
definitionCHROMAT_FILE: MSMg01no534_i04.b1 PHD_FILE: MSMg01no534_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:03 2005CHROMAT_FILE: MSMg01no534_i04.g1 PHD_FILE: MSMg01no534_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGTTCTTTGAAATGGTGTATTTTGAACAGTACTCCTATTGAGACACTA
TATTTTAATTATTAAATTACAAAAACTTGAAACTTTTTTAATCATTGGTA
ATTTTTCTTTGCTTTTATATATTTATCTTTTTGTGGTATTAGAGTCATCC
ATCCTCTGTACCCTGCCCTCCTAGTTTATAAATATTTTCAAAATACAGGT
ATTAATTCTTTCTCAGATCTAGATGTCTAAGTGAGTTTACCTGGCTTTTT
GCAAGTATTTGCACCACTCTTGACATCTCTTTGGCTATTGAAAAATCTGC
TCAGGTTGTCTTGGTTTCATTGCTGGCCACATGCATCTAAGAATTTGTTG
ATTGGCTCTGTATTTTTCTATTTTCTTAAAATATAGGCTTTCACAGAGTT
TCCTTATTATCTTCTAGATTTCATTGTTTTTATTTCTCCTGGTTACTTTT
GGCTGAAAGTTTACCAATCTTAGTTTTTCTGAAGGAACCAGCTCTTCCCA
TCAATTGTCTTCTTCTTTATGGCAGTCATTTATAGCTGCTGTGTTTTAAA
TTTTTACTTTTTCAAGATTTTGACTTTATCTAGTTTTTATTTCTGTAAAA
CCTTAAGGTTAGCCATGAAATTAAGTTCAATTTTTACATACGAGCCTGTC
TTTACATTTTGTGTAAGGATCAAGTA
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGGGAACTTTCACTGGATAGCCATTGT
TGGACTAGTTGGACAACAACATGTACACCACTCTAATTAGTAAATTCTTA
GGTAAGTAGGTAGACAGATTCATTCTATCAGTTTTGAGAACCCTGACTTT
GCTAAGTTAAGATTCTTACATATTCTTAACTACTAAGATACTTAACCATT
ACTTTGTACATTATCAACCAAGAATATACCTTCCCCTGGATCCACTTCCA
CGATCACTGAAATAATTGGGGCTTCCCTCTGGAATCACGAGATCCAAAAC
TGCTGTAGGCATCTTTATCTTTACTACAGGTTCATCCTGGAACTGTTCTT
AATCACGGACCCCCTTTCAAGGGAAAAAAAAAACCAAAACCCCAAAAAGG
TTTTTTTTTTTGGCCCACAAATTTTTTAAAAAAACCGGGGATCCCCCGNA
AAGGGGGAGGAAAACCCGGGTGATCCCCCAAAAGAAATTTCCACCGGCTT
TTTTAAAATTGGGGCTTTTTTTAAATTTCCCCAAAAAAAAAAAAAGGGGG
GGGGGGGCTTTTGTAAAAAAAAACCCGGGGGAAAGGGGGGGGGCCCCCCT
CCTCGGGGGGAAATTTTTAAGAAAAGGGGGGCTTTCTTATATTATGGGGG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_i04.b1 MSMg01no534_i04.b1 CHROMAT_FILE:
MSMg01no534_i04.b1 PHD_FILE: MSMg01no534_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:03 2005
         (684 letters)



>mm_chrY_747230_748313
          Length = 1084

 Score = 1307 bits (676), Expect = 0.0
 Identities = 679/680 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgttctttgaaatggtgtattttgaacagtactcctattgagacactatatttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gaattctgttctttgaaatggtgtattttgaacagtactcctattgagacactatatttt 644

                                                                       
Query: 65  aattattaaattacaaaaacttgaaacttttttaatcattggtaatttttctttgctttt 124
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 643 aattattaaattacaaaaacttgaaacttttttaatcagtggtaatttttctttgctttt 584

                                                                       
Query: 125 atatatttatctttttgtggtattagagtcatccatcctctgtaccctgccctcctagtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 atatatttatctttttgtggtattagagtcatccatcctctgtaccctgccctcctagtt 524

                                                                       
Query: 185 tataaatattttcaaaatacaggtattaattctttctcagatctagatgtctaagtgagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tataaatattttcaaaatacaggtattaattctttctcagatctagatgtctaagtgagt 464

                                                                       
Query: 245 ttacctggctttttgcaagtatttgcaccactcttgacatctctttggctattgaaaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttacctggctttttgcaagtatttgcaccactcttgacatctctttggctattgaaaaat 404

                                                                       
Query: 305 ctgctcaggttgtcttggtttcattgctggccacatgcatctaagaatttgttgattggc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ctgctcaggttgtcttggtttcattgctggccacatgcatctaagaatttgttgattggc 344

                                                                       
Query: 365 tctgtatttttctattttcttaaaatataggctttcacagagtttccttattatcttcta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tctgtatttttctattttcttaaaatataggctttcacagagtttccttattatcttcta 284

                                                                       
Query: 425 gatttcattgtttttatttctcctggttacttttggctgaaagtttaccaatcttagttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gatttcattgtttttatttctcctggttacttttggctgaaagtttaccaatcttagttt 224

                                                                       
Query: 485 ttctgaaggaaccagctcttcccatcaattgtcttcttctttatggcagtcatttatagc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ttctgaaggaaccagctcttcccatcaattgtcttcttctttatggcagtcatttatagc 164

                                                                       
Query: 545 tgctgtgttttaaatttttactttttcaagattttgactttatctagtttttatttctgt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 tgctgtgttttaaatttttactttttcaagattttgactttatctagtttttatttctgt 104

                                                                       
Query: 605 aaaaccttaaggttagccatgaaattaagttcaatttttacatacgagcctgtctttaca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 aaaaccttaaggttagccatgaaattaagttcaatttttacatacgagcctgtctttaca 44

                               
Query: 665 ttttgtgtaaggatcaagta 684
           ||||||||||||||||||||
Sbjct: 43  ttttgtgtaaggatcaagta 24


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)