Query= MSMg01no534_l05.b1 MSMg01no534_l05.b1 CHROMAT_FILE:
MSMg01no534_l05.b1 PHD_FILE: MSMg01no534_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:18 2005
(228 letters)
>mm_chrX_121307963_121308590
Length = 628
Score = 373 bits (193), Expect = e-108
Identities = 217/225 (96%)
Strand = Plus / Minus
Query: 4 ggaattcaaaaacactccaggcattcttctctggtaaggttcagacctacagcttaagaa 63
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 391 ggaattcaaatacactccaggcattcttctctggtaaggttcagacctacaacttaagaa 332
Query: 64 ccacagatcttctaaactactgtatggaccaagggaacttctgatatgcccattctgaac 123
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 331 ccacagatcttccaaactactgtatggaccaagggaacttctgatctgcccattctgaac 272
Query: 124 cagggattctcagatcatccccaatagcctaagtgaccttcatcttacctgtctagaacc 183
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 271 cagggatcctcagatcatccccaatagcctaagtgaccttaatcttacctgtctaggacc 212
Query: 184 agtgtgctggggctggagagatggctcagcagttaaaagcactga 228
| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 aatgtgctggggctggagagatggctcagcagttaaaagcactga 167
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space: 135561
Effective search space used: 135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no534_l05.g1 MSMg01no534_l05.g1 CHROMAT_FILE:
MSMg01no534_l05.g1 PHD_FILE: MSMg01no534_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:18 2005
(595 letters)
>mm_chrY_1792254_1793248
Length = 995
Score = 240 bits (124), Expect = 2e-67
Identities = 272/384 (70%), Gaps = 102/384 (26%)
Strand = Plus / Minus
Query: 20 ggactgcaagcaggtcttctgaaaaagcaatgcatgatataattacctgaattttctggc 79
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
Sbjct: 332 ggactgcaagcaggtcttctgcaaaggcaatgcatgatataattacctgaattttctgtc 273
Query: 80 agtgctcttcaatattgtgttctacgtgatgcaatattccactctctttctctatctctg 139
|||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 272 agtgctcttcaatattgtattctacgtgatgcaatattcctctctctttctc-------- 221
Query: 140 tctctgtctctgtccctctctgtctctgtctctctctgtctctttgtctctctctctctg 199
|||||| ||||| ||||||| |||||||||||||| ||||||||||
Sbjct: 220 tctctg--tctgt--ctctctg--tctgtctctctctg------------tctctctctg 179
Query: 200 tctctctgtatctgtctctgtctctgtctctgtctctgtctctgtctctatctctctctc 259
|| ||||||||||||
Sbjct: 178 tc------------------------------tctctgtctctg---------------- 165
Query: 260 tctctctctctctctctctctctctctctttctctctctctctttctgtctctctcaata 319
|||||||||||||| ||||||||||||||||
Sbjct: 164 --------------tctctctctctctc----------------tctgtctctctcaata 135
Query: 320 tctattcctctaacactcagtatgactaatgattctcttatcttctcttctaaaaagggg 379
|||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 134 tctactcctctaacactcagtatgactaatgattctcttatcttctctcctacaaagggg 75
Query: 380 atgatattttaatgtcatctgcaa 403
|||| |||| ||||||||||||||
Sbjct: 74 atgacatttgaatgtcatctgcaa 51
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
