Query= MSMg01no545_g23.b1 MSMg01no545_g23.b1 CHROMAT_FILE:
MSMg01no545_g23.b1 PHD_FILE: MSMg01no545_g23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:24 2005
(690 letters)
>mm_chrY_1715902_1716995
Length = 1094
Score = 296 bits (153), Expect = 4e-84
Identities = 434/545 (79%), Gaps = 62/545 (11%)
Strand = Plus / Minus
Query: 15 ttccactgtactggagcatcaagttcaatgggaacagaga-ataggggctg-gtcctggg 72
||||| ||||||||| ||||||| |||| |||||||||| | ||| |||| | |||||
Sbjct: 552 ttcca-tgtactggaacatcaagaacaataggaacagagaga-aggagctgag-cctgga 496
Query: 73 aaagaga-aaggggccaatcag-tcattttatccttcctctcaggtagcagttta----- 125
||| ||| | ||||| |||||| || ||||||||| |||||||| ||||||||||
Sbjct: 495 aaacagagagggggctaatcagttc-ttttatcctgcctctcagatagcagtttagtttt 437
Query: 126 ttttggtt-caagaaacaaatatactttctttcaatgaattttataagtgaacaggaaat 184
|||| || |||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 436 tttt--ttccaagaaacaaatatactttctttcaatgaattttgttagtgaacaggaaat 379
Query: 185 atttccatctctcagaac-tgcctgtgga-aattttat--tgtggttataggagtttttt 240
|||| ||||| ||||| | | | ||| | |||||||| ||| |||||| || |||||
Sbjct: 378 attttcatctatcaga-cataacagtg-acaattttatattgt--ttatagaagattttt 323
Query: 241 tgggtctattttccgaagaacaattaaagccaggtatgtt-taaacatacctgtattagc 299
|||| ||||||| ||||||||| ||||||||||||||| | || ||| | ||| |||
Sbjct: 322 tgggactattttattaagaacaatgaaagccaggtatgttgtcaa-atatcggtaataga 264
Query: 300 accaacacggaatgctgaaccgcaacactctatcac-ttcctagagaatacataacat-- 356
||| ||| ||||||||||||| ||||| |||| || ||||| ||||||| |||||
Sbjct: 263 acctacatggaatgctgaacctcaacattctag-acgttcctggagaata---aacatca 208
Query: 357 -actaagtgcctacc-----tcaacactaaaatgaagtgaaataaaatcaaacaaatgta 410
||||||| | |||| || |||||||| |||||||||| | ||| ||
Sbjct: 207 cactaagt----a--aaaattcaa-ac-aaaatgaa-----ataaaatcaatccaattta 161
Query: 411 ccttcgataattgtatctagtgca-ttgggaagtttataagataatgaatcaa-aaa--- 465
||||||||| |||||||| || || || |||| | |||||||||| || ||| |||
Sbjct: 160 ccttcgatatttgtatctcgt-caatttggaaactaataagataataaaccaagaaataa 102
Query: 466 att-caattatctttatga-taaaaataattagaaatgttaagaaggtt--aaacaatta 521
||| ||||||||||||||| |||||||||||||||||||||||||| || ||||||| |
Sbjct: 101 atttcaattatctttatgaataaaaataattagaaatgttaagaagttttaaaacaatca 42
Query: 522 ctaca 526
|||||
Sbjct: 41 ctaca 37
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1094
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1084
Effective search space: 737120
Effective search space used: 737120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_g23.g1 MSMg01no545_g23.g1 CHROMAT_FILE:
MSMg01no545_g23.g1 PHD_FILE: MSMg01no545_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:24 2005
(532 letters)
>mm_chrY_1655145_1656075
Length = 931
Score = 398 bits (206), Expect = e-115
Identities = 440/522 (84%), Gaps = 27/522 (5%)
Strand = Plus / Plus
Query: 1 tctgctgatctgcacaggaaagcaca-aaaatctaggactatacagaaatatccagttcc 59
|||||||| ||||||||||| ||| | |||| |||||||||| |||||| || |||| ||
Sbjct: 201 tctgctgaactgcacaggaaggcatagaaaaactaggactatccagaaaaatgcagtccc 260
Query: 60 agaggaaa-aaaaa---aaagaaacagg-gaggaattggaaag-tacaaataagaatttg 113
||| ||| ||||| ||| ||| ||| |||||||||| ||| | ||||||| ||
Sbjct: 261 aga--aaagaaaaacagaaa-aaa-aggagaggaattggtaagcaaaaaataag----tg 312
Query: 114 aatgtacagattgtaaatcctgtctctgggagtaataatcaagata-ctttgaaaggaac 172
||||| | |||||||||||||||||||| || |||||||||||| | |||| ||||||||
Sbjct: 313 aatgt-ctgattgtaaatcctgtctctgagaataataatcaagacaccttt-aaaggaac 370
Query: 173 aatcaagccatgtttaaaag-actggacacaccatttggcatatgttatataaatcagta 231
||| || ||||| |||||| ||| ||||||| || ||||| ||||||||||||||||||
Sbjct: 371 aatgaaaccatgagtaaaagaactagacacacaatatggcaaatgttatataaatcagta 430
Query: 232 aaaataattaaaaatgtctcattaaaattcacaacagtccctttaagttttttcttctgg 291
||| |||||||||||| ||||||||| | | || | |||| ||| ||||| |||| |||
Sbjct: 431 gaaacaattaaaaatgtgtcattaaaaatgaaaatattccccttatgttttctcttgtgg 490
Query: 292 tttt-cttctttaaatatcttattgaatctgaagtgatggctcag-catttctgaacact 349
|||| ||| ||||||| |||||||||||||| || ||| | |||| | |||||| ||||
Sbjct: 491 ttttcctt-tttaaatgtcttattgaatctggagggattgatcagac-tttctggacacc 548
Query: 350 ggcagctcatgcacagcatacacttggacttgccacat-ttccattggctgtttacaact 408
| |||| ||| ||||||||||||||||||||||||| | ||||||||||| |||||||||
Sbjct: 549 gccagcacatacacagcatacacttggacttgccac-tcttccattggctctttacaact 607
Query: 409 tcttctattttagtaaccacagggaat-ccacactcccccttcccatgagacaatgtatc 467
| |||| || ||| ||||||||| || |||||||||| ||||||||| ||||||||||
Sbjct: 608 ccgtctacttcagtgaccacaggg-atgccacactccctcttcccatgggacaatgtatt 666
Query: 468 catacctatacagagaattcaaaacaaacaaaatctcttcaa 509
|||||||||||||||||||||||||||||||||| |||||||
Sbjct: 667 catacctatacagagaattcaaaacaaacaaaatgtcttcaa 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 931
Length adjustment: 10
Effective length of query: 522
Effective length of database: 921
Effective search space: 480762
Effective search space used: 480762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
