BAC Information

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BAC

Clone NameMSMg01-546O12
ChromosomeY (Build37)
Map Location 2,791,342 - 2,791,932
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546O12.T7 (MSMg01no546_o12.b1)MSMg01-546O12.TJ (MSMg01no546_o12.g1)
ACCAG611619AG611620
length735734
length of high quality
(start - end)		697 (39 - 735)666 (69 - 734)
definitionCHROMAT_FILE: MSMg01no546_o12.b1 PHD_FILE: MSMg01no546_o12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:22 2005CHROMAT_FILE: MSMg01no546_o12.g1 PHD_FILE: MSMg01no546_o12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:22 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
GGCAGTCACCAGCAGCTAAAAGAAGGTTTTAGTCTGTTGGCTCCACTAAC
TGACTTCCAATTTACTCACTCCTCACCTCCCCAAGCCCCAAGAAGACTTC
CAGGGTCTCCAATTCCCTGGCCTTCCTGCTTTCTGTTAGAAAATAATTCT
GTTCAAACCCCTGCCCTTAGCGAAGTTCTCTGTTTTTCTCAGCAGAGACC
TAAGTGGGAAAAGTTGATTGTGAGCCTGGAAGCAGTACCTTCCTGAGTCC
AGTGAGGGTCACCTCCTCTCCTTACTCCTAAAGTAACACCTCCACCCCTC
CACCTTCTTCCCCACACAGGCCCCCAGCTCAAACAGGATTAATCATCTTT
CAACAGACAATTGACTACCTCTACTGAGACTTCTCCCTACCATGCTTCCT
CAAGAACCTTGCTTCCACAAGAACTCGGCTTGATGACTACCACAAAGCAT
ACTGGGTAACAGGGTTTGGATAGCGGAAAACAATCTCAGCCAAGGCCCTT
GCTGATTGGCAGTGTTTGCACATGTGTACTAAGGGTGAGAAAGGCTCAAT
CAGTCGTCTGTCATTGAAGAGCAAAAAGGAGGTAGTATTTTAGCTGCCAC
TACTACCCAGAGGCTTTCCATTTTCCAAGTTTACAATACTAACTTGAAAG
CTAAAATAAAATGGACCCCAAACAAGACTCTCCTN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTAATGG
GGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTG
GATATTAGTCCCCCTTTATTGAATTTCTGTACACCCATATACAACTTCTG
AAACATATTTTTATACTGCTCATATAATTTGTTGTTGATCATGTCCCTGT
AAAGTAAAGTAATGAAAGCAGTCAAATTTATACAAATAGGAAAAGAACGC
TCAAAAAAATTAAATTGTTCTTTTCATACAATAAAAAGAAAAATAGCAGT
AAAAAATCATCAAATGGGAAGTAATTACAGATTTTTTTCCTAAGAGATTA
TCAGAGAAGTTTTATTTCATGTTTTAGATTTTCAAAATTAAAGTTTACAG
ACAGATAAATAGATAGATAGATAGATAGATGATAGATAGATAGATAGATA
GATAGATAGATACATAGATAATCTTTTCTAGAAAATTAATTGTATTTCAA
AGTAGGGTTTTATTCTGTTCTACCAAATAGAAGGTCTAATTTTTTTCCTA
TAATGTCTCAGTTAAGACTTAGTGTAAAACAATTCAATTAAAATATACAA
ATTGCCTGTATATGTAACTGATTCTTTTCCATACTGTTAAACATAATAAA
CCATAAAGTACATTTCTAAATCTTTGTGGAAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_o12.g1 MSMg01no546_o12.g1 CHROMAT_FILE:
MSMg01no546_o12.g1 PHD_FILE: MSMg01no546_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:22 2005
         (666 letters)



>mm_chrY_2791064_2792132
          Length = 1069

 Score =  893 bits (462), Expect = 0.0
 Identities = 552/592 (93%), Gaps = 22/592 (3%)
 Strand = Plus / Plus

                                                                       
Query: 96  ctttattgaatttctgtacacccatatacaacttctgaaacatatttttatactgctcat 155
           |||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| ||||
Sbjct: 279 ctttattgaatttctgtatacccacatacaacttctaaaacatatttttatactggtcat 338

                                                                       
Query: 156 ataatttgttgttgatcatgtccctgtaaagtaaagtaatgaaagcagtcaaatttatac 215
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 339 ataatttgttgttgatcatgtccctgtaaagcaaagtaatgaaagcagtcaaatttatac 398

                                                                       
Query: 216 aaataggaaaagaacgctcaaaaaaattaaattgttcttttcatacaataaaaagaaaaa 275
           |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| 
Sbjct: 399 aaataggaaaagaacgctcaaaaaaattaaattgttcttttcgtactataaaaagaaaac 458

                                                                       
Query: 276 tagcagtaaaaaatcatcaaatgggaagtaattacagatttttttcctaagagattatca 335
           |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 459 tagcagtaaaaaatcatctaatgggaagttattacagatttttttcctaagagattatca 518

                                                                       
Query: 336 gagaagttttatttcatgttttagattttcaaaattaaagtttacagacagataaataga 395
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 519 gagaagttttattttatgttttagattttcaaaattaaagtttacagacagatagataga 578

                                                                       
Query: 396 tagatagatagatagatgatagatagatagat-----------agatagatagatagata 444
           ||||||||||||||||||||||||||||||||           |||||||||||||||||
Sbjct: 579 tagatagatagatagatgatagatagatagatgatagatagatagatagatagatagata 638

                                                                       
Query: 445 catagataa----tcttttct--agaaaattaattgtatttcaaagtagggttttattct 498
           |||||||||    |||||| |  ||||||||||||| |||||||||||||||||||||||
Sbjct: 639 catagataagtaatcttttttttagaaaattaattgcatttcaaagtagggttttattct 698

                                                                       
Query: 499 gttctaccaaatagaaggtctaatttttttcct-ataatgtctcagttaagacttagtgt 557
           |||||||||||||||||||||||||||||| || ||| || |||||||||||||||||||
Sbjct: 699 gttctaccaaatagaaggtctaattttttttcttatattgactcagttaagacttagtgt 758

                                                                       
Query: 558 aaaaca--attcaattaaaatatacaaattgcctgtat-atgtaactgattcttttccat 614
           ||||||  ||||| ||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 759 aaaacataattcagttaaaatatacaaattgcctg-attatgtaactgattcttttccat 817

                                                               
Query: 615 actgttaaacataataaaccataaagtacatttctaaatctttgtggaaaac 666
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 actgttaaacataataaaccataaagtacatttctaaatctttgtggaaaac 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1069
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1059
Effective search space:   694704
Effective search space used:   694704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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