Query= MSMg01no547_h04.b1 MSMg01no547_h04.b1 CHROMAT_FILE:
MSMg01no547_h04.b1 PHD_FILE: MSMg01no547_h04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:05 2005
(712 letters)
>mm_chr5_126312514_126313622
Length = 1109
Score = 244 bits (126), Expect = 2e-68
Identities = 502/668 (75%), Gaps = 96/668 (14%)
Strand = Plus / Plus
Query: 58 tctccttacatcacatag-atattttctacagt-gcatataagcaa---atatattttag 112
||||||||||||||| || | ||||||||| || | |||||| || |||||||||||
Sbjct: 259 tctccttacatcaca-aggacattttctactgtag-atataataaacacatatattttag 316
Query: 113 aatatactgaaactt-aaaaatgtaaattaaaaaaaaaacaaaaaatctaccaacttcaa 171
||||||| ||||||| ||||||| |||| ||||||| || |||||| |||| |
Sbjct: 317 aatatacagaaacttgaaaaatggaaatggaaaaaaatacc-----tctaccgactttga 371
Query: 172 attaaaaaaacacatttattttagaattctctaggatactcgcaatttcctgtattccct 231
||||||||| |||||||||||||||||||||||||||| | ||||||||| | || ||||
Sbjct: 372 attaaaaaa-cacatttattttagaattctctaggatagttgcaatttcccgcataccct 430
Query: 232 actcatgatgtccatatgttagcatcttaca-aatttgtatgacaataatgaggagaaaa 290
|| |||||| ||||||| ||||||||||||| ||| |||||| |||||| ||||||||
Sbjct: 431 acacatgatttccatatattagcatcttacataatc-gtatgaaaataattaggagaaat 489
Query: 291 taaaatttgtaaggaaaaaaaaaagacagtttt---------gt--ct--t--------- 328
||| ||||||| |||||||| | ||||| || || |
Sbjct: 490 taacctttgtaa----aaaaaaaatcc-gtttttccttccctgttcctgctccctgaatg 544
Query: 329 ---------agactacttattaacaaatgcctgggccacaaactgtggcttattcccaga 379
|||||| |||||||||||||||| |||||||| || ||||| |||| ||
Sbjct: 545 acgactctgagactatttattaacaaatgcctaggccacaagctttggctccttcctgga 604
Query: 380 ataacgtatttaacacattcaaaatattttatgttttgttcatttttagttacc-c-ctt 437
|||| |||||||| |||||||| |||| || || || | ||| |||| |||| | |||
Sbjct: 605 ctaacttatttaacccattcaaactattctaagtcttctacatggttagatacctctctt 664
Query: 438 t-atc-tatttacttagcatcttcctaaatatctcccttagcatatgtgccagcatctgt 495
| ||| | || |||||||||||||| || |||||||||||||| || ||||||||| |
Sbjct: 665 tcatcctcttc-cttagcatcttcctcaacatctcccttagcatctgccccagcatcttt 723
Query: 496 ccctgaatctg--tttattctcctaatatttcatagaatact-ctctttttgaaaagt-- 550
|||||||||| ||||||||| || ||| | | |||
Sbjct: 724 ccctgaatctccttttattctc------tt---------actgc-c---------agtgt 758
Query: 551 ctcacctcatattttctt-cctcagctcatttgtcatacacattatttaattgacagatg 609
|||||||| |||||| || |||||||||||| |||||| || |||||| |||||||| ||
Sbjct: 759 ctcacctcctatttt-ttgcctcagctcattggtcatagactttattttattgacaggtg 817
Query: 610 atgtttataagagagtctc---aaa-at-ttggggcactaataacaactaaat-atctca 663
||| |||||||||| |||| | | | ||||||||||| || ||||||||| | ||||
Sbjct: 818 atgcttataagagattctctctacagaccttggggcactattatcaactaaatga-ctca 876
Query: 664 tttaaaat 671
||||||||
Sbjct: 877 tttaaaat 884
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1109
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1099
Effective search space: 771498
Effective search space used: 771498
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no547_h04.g1 MSMg01no547_h04.g1 CHROMAT_FILE:
MSMg01no547_h04.g1 PHD_FILE: MSMg01no547_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:05 2005
(698 letters)
>mm_chrY_1655631_1656723
Length = 1093
Score = 574 bits (297), Expect = e-168
Identities = 597/705 (84%), Gaps = 32/705 (4%)
Strand = Plus / Plus
Query: 1 aaaacaaacaaaatctcttcaatctgtctcaccaatcatacattaggtccaatg-cttgg 59
|||||||||||||| ||||||| ||||||| |||| || |||||||||||||| | |
Sbjct: 201 aaaacaaacaaaatgtcttcaaagtgtctcagcaattatgcattaggtccaatgtc-tca 259
Query: 60 gtgctttctgtttcaggctcacaatgatcaatggtatatacttt-ctaggttgtataact 118
||||| || | ||||||||||| ||| |||||| |||| ||| ||| ||||||||||
Sbjct: 260 gtgctctcagcttcaggctcac---gattaatggtttata-tttgctaccttgtataact 315
Query: 119 gcacttca-tttctctaccaggaacctttcctcagattctgtcctcatcaagaatcccat 177
||||| || ||| |||||| |||| ||| |||||||| ||||||||| |||| || |||
Sbjct: 316 gcactacagttt-tctacctggaaacttgcctcagatcctgtcctcagcaaggat--cat 372
Query: 178 -ctaataccatcagacacttctatgc-atcagagggaacaaggtctagctgtgtgccttg 235
| || ||||||||| | |||||||| | |||||||||||| ||||||||||||||| ||
Sbjct: 373 gc-aacaccatcagaaaattctatgcta-cagagggaacaaagtctagctgtgtgccatg 430
Query: 236 caggttgggtagagcactgtcaatatcccttctcctccagcaaaccctctcaag-gctca 294
||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 431 cagtttggttagagcactgtcaatatcccttctcctccagcaaaccctctcaaatgctca 490
Query: 295 caacggttgtcttccaggataaaatctgattgcctaagagaaggagcaaatcatctctgc 354
||| | |||||||||| || ||| ||||| ||||||| |||||||||||| |||||| |
Sbjct: 491 caaagtttgtcttccaagacaaa-tctgagtgcctaaaagaaggagcaaagcatctccac 549
Query: 355 ttgctctaatgtctaaatgacattgcagattaagaaaaaacctag-agcttccccaagat 413
|||||| ||| |||||||| |||||||||||||||||| ||||| || |||||||||||
Sbjct: 550 ttgctccaatatctaaatgccattgcagattaagaaaatccctagcag-ttccccaagat 608
Query: 414 tctcagtccgggagcatttggacaatccattactttcatagggtccaaaattgtttgaat 473
||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct: 609 tctcagtccaggagcatttgggcaatctattactttcatagggtccaaacttgtttgaat 668
Query: 474 tctacagaccaatgaattgtcccattagaagccacctttccagcaggtagcagcagctcc 533
||| |||||||||| ||||| ||||||||||||| || ||||||||||||||| |||||
Sbjct: 669 tctgcagaccaatgcattgttccattagaagccaactcaccagcaggtagcagctgctcc 728
Query: 534 aactgctgtctccaaaggcagttaaacaaaagcaacctgaagaggcagatgaactgctcc 593
||||||||||||||| |||| |||||||||||| ||||||| ||| || |
Sbjct: 729 aactgctgtctccaatggcacctaaacaaaagca-------gaggcaggtgatcttataa 781
Query: 594 tggtcccaccaaggtgactttggtttctggtgggagggggcaattacatgctgtgagaat 653
|||||||||||||||||||||| ||||| | |||| |||| |||| ||||||||||
Sbjct: 782 tggtcccaccaaggtgactttgacttctgttaggagcaggcacttacctgctgtgagac- 840
Query: 654 tctgtt---ctgttgatgtgctcacccaccaaaacactcctcttg 695
|| || || |||||||||||||||| |||| |||||||||||
Sbjct: 841 -ct-ttgccctcttgatgtgctcacccaacaaagcactcctcttg 883
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1093
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1083
Effective search space: 745104
Effective search space used: 745104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
